Comparing
padix-key:rust-alphabet
(c0e31af
) withrust
(9c2c6b2
)-54%
- Improvement
- 20
- Regression
- 3
- Untouched
- 64
- New
- 3
- Skipped
- 11
Different runtime environments detected
Some benchmarks with significant performance changes were compared across different runtime environments, which may affect the accuracy of the results. Learn more about regression causes.Benchmarks
101 total
benchmark_connect[connect_via_residue_names]
benchmarks/structure/benchmark_bonds.py×12
50.6 ms4.3 ms
benchmark_connect[connect_via_distances]
benchmarks/structure/benchmark_bonds.py×10
26.1 ms2.6 ms
benchmark_get_structure_with_bonds
benchmarks/structure/benchmark_pdb.py×8.4
77.3 ms9.2 ms
benchmark_get_coord
benchmarks/structure/benchmark_pdb.py×7.2
4,239.1 µs584.9 µs
benchmark_partial_charges
benchmarks/structure/benchmark_charges.py×5
724.8 µs144.2 µs
benchmark_get_structure
benchmarks/structure/benchmark_pdb.py×5
20.1 ms4 ms
benchmark_get_remark
benchmarks/structure/benchmark_pdb.py×4.4
757.8 µs171.5 µs
benchmark_bond_list_creation
benchmarks/structure/benchmark_bonds.py×3
813.5 µs269 µs
benchmark_set_structure
benchmarks/structure/benchmark_pdb.py×2.9
34.2 ms11.7 ms
benchmark_set_structure_with_bonds
benchmarks/structure/benchmark_pdb.py×2.9
34.2 ms11.8 ms
benchmark_cell_list_creation
benchmarks/structure/benchmark_celllist.py×2.8
940.1 µs338.5 µs
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py×2.4
81.6 ms33.8 ms
benchmark_get_bonds
benchmarks/structure/benchmark_bonds.py×2.1
15.3 ms7.3 ms
benchmark_read
benchmarks/structure/benchmark_pdb.py+66%
3.5 ms2.1 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py+60%
124.7 ms77.9 ms
benchmark_concatenate
benchmarks/structure/benchmark_bonds.py+54%
317.5 µs206.8 µs
benchmark_conversion[get_all_bonds]
benchmarks/structure/benchmark_bonds.py+20%
180.2 µs149.7 µs
benchmark_get_all_bonds
benchmarks/structure/benchmark_bonds.py+20%
181.7 µs151.4 µs
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py+11%
110.6 ms100 ms
benchmark_conversion[bond_type_matrix]
benchmarks/structure/benchmark_bonds.py+10%
1.4 ms1.3 ms
benchmark_cell_list_compute_contacts[MAPPING]
benchmarks/structure/benchmark_celllist.pyN/A
N/A17.6 ms
benchmark_cell_list_compute_contacts[MASK]
benchmarks/structure/benchmark_celllist.pyN/A
N/A20.5 ms
benchmark_cell_list_compute_contacts[PAIRS]
benchmarks/structure/benchmark_celllist.pyN/A
N/A17.9 ms
benchmark_conversion[as_graph]
benchmarks/structure/benchmark_bonds.py-27%
8.7 ms12 ms
benchmark_find_rotatable_bonds
benchmarks/structure/benchmark_bonds.py-54%
43.9 ms96.2 ms
Commits
Click on a commit to change the comparison rangeBase
main
9c2c6b2
-54.38%
Port alphabet codec to Rust
c0e31af
26 days ago
by padix-key