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benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]created

1 year ago

, last run

8 days ago

0

442

9.4 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]created

1 year ago

, last run

8 days ago

1

442

12.5 ms

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]created

1 year ago

, last run

8 days ago

0

445

9.3 ms

benchmark_indexing_from_kmer_selection[None-KmerTable]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-KmerTable]created

1 year ago

, last run

8 days ago

1

445

12.5 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]created

1 year ago

, last run

8 days ago

0

442

10.4 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]created

1 year ago

, last run

8 days ago

1

442

13.5 ms

benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]created

1 year ago

, last run

8 days ago

0

445

10.3 ms

benchmark_indexing_from_kmers[None-KmerTable]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-KmerTable]created

1 year ago

, last run

8 days ago

1

445

13.4 ms

benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]created

1 year ago

, last run

8 days ago

0

442

14.5 ms

benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]created

1 year ago

, last run

8 days ago

0

442

17.6 ms

benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]created

1 year ago

, last run

8 days ago

0

445

9.4 ms

benchmark_indexing_from_sequences[None-KmerTable]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-KmerTable]created

1 year ago

, last run

8 days ago

1

445

12.6 ms

benchmark_kmer_decomposition[11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

184.1 µs

benchmark_kmer_decomposition[None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[None]created

1 year ago

, last run

8 days ago

1

445

147.2 µs

benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

623.9 µs

benchmark_match[BucketKmerTable(10000)-None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-None]created

1 year ago

, last run

8 days ago

0

442

574 µs

benchmark_match[KmerTable-11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

541.1 µs

benchmark_match[KmerTable-None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-None]created

1 year ago

, last run

8 days ago

0

445

492.8 µs

benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

543.2 µs

benchmark_match_kmer_selection[BucketKmerTable(10000)-None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-None]created

1 year ago

, last run

8 days ago

0

442

544.1 µs

benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

460.6 µs

benchmark_match_kmer_selection[KmerTable-None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-None]created

1 year ago

, last run

8 days ago

0

445

462.5 µs

benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

12.9 ms

benchmark_match_table[BucketKmerTable(10000)-None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-None]created

1 year ago

, last run

8 days ago

0

442

13 ms

benchmark_match_table[KmerTable-11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

15 ms

benchmark_match_table[KmerTable-None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-None]created

1 year ago

, last run

8 days ago

0

445

15.2 ms

benchmark_score_threshold_rule[11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

2 s

benchmark_score_threshold_rule[None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[None]created

1 year ago

, last run

8 days ago

0

445

2 s

test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

7.4 ms

test_pickle_and_unpickle[BucketKmerTable(10000)-None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-None]created

1 year ago

, last run

8 days ago

0

442

7.4 ms

test_pickle_and_unpickle[KmerTable-11*11*1*1***111]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-11*11*1*1***111]created

1 year ago

, last run

8 days ago

0

442

39 ms

test_pickle_and_unpickle[KmerTable-None]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-None]created

1 year ago

, last run

8 days ago

0

445

39.1 ms

benchmark_structural_alphabet_methods[to_3di]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_3di]created

1 year ago

, last run

8 days ago

0

387

10.3 ms

benchmark_structural_alphabet_methods[to_protein_blocks]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_protein_blocks]created

1 year ago

, last run

8 days ago

1

387

6.4 ms

benchmark_lddt[False-all]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-all]created

1 year ago

, last run

8 days ago

0

302

228.6 ms

benchmark_lddt[False-atom]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-atom]created

1 year ago

, last run

8 days ago

0

302

311.7 ms

benchmark_lddt[False-chain]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-chain]created

1 year ago

, last run

8 days ago

0

302

318.3 ms

benchmark_lddt[False-residue]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-residue]created

1 year ago

, last run

8 days ago

0

302

323.6 ms

benchmark_lddt[True-all]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-all]created

1 year ago

, last run

8 days ago

0

302

882.2 ms

benchmark_lddt[True-atom]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-atom]created

1 year ago

, last run

8 days ago

0

302

1.9 s

benchmark_lddt[True-chain]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-chain]created

1 year ago

, last run

8 days ago

0

302

1.9 s

benchmark_lddt[True-residue]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-residue]created

1 year ago

, last run

8 days ago

0

302

1.9 s

benchmark_compress

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_compresscreated

1 year ago

, last run

8 days ago

2

426

700.4 ms

benchmark_deserialize_pdbx[bcif]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[bcif]created

1 year ago

, last run

8 days ago

0

477

110.3 ms

benchmark_deserialize_pdbx[cif]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[cif]created

1 year ago

, last run

8 days ago

1

477

108 ms

benchmark_get_assembly

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_get_assemblycreated

12 days ago

, last run

8 days ago

0

8

900.2 ms

benchmark_get_structure[bcif-False]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-False]created

1 year ago

, last run

8 days ago

0

475

18.4 ms

benchmark_get_structure[bcif-True]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-True]created

1 year ago

, last run

8 days ago

1

475

82.4 ms

benchmark_get_structure[cif-False]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-False]created

1 year ago

, last run

8 days ago

2

475

60.3 ms

benchmark_get_structure[cif-True]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-True]created

1 year ago

, last run

8 days ago

2

475

127.3 ms

benchmark_serialize_pdbx[bcif]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[bcif]created

1 year ago

, last run

8 days ago

2

477

111.8 ms

benchmark_serialize_pdbx[cif]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[cif]created

1 year ago

, last run

8 days ago

1

477

204.3 ms

benchmark_set_structure[bcif-False]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-False]created

1 year ago

, last run

8 days ago

1

475

8.1 ms

benchmark_set_structure[bcif-True]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-True]created

1 year ago

, last run

8 days ago

1

475

30.4 ms

benchmark_set_structure[cif-False]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-False]created

1 year ago

, last run

8 days ago

1

475

106.2 ms

benchmark_set_structure[cif-True]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-True]created

1 year ago

, last run

8 days ago

1

475

130.7 ms

benchmark_superimpose[superimpose]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose]created

1 year ago

, last run

8 days ago

0

301

2.5 ms

benchmark_superimpose[superimpose_homologs]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_homologs]created

1 year ago

, last run

8 days ago

0

301

24.4 ms

benchmark_superimpose[superimpose_structural_homologs]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_structural_homologs]created

1 year ago

, last run

8 days ago

0

301

32.5 ms

benchmark_superimpose[superimpose_without_outliers]

CPU Simulation

Uses the CPU Simulation instrument
to collect CPU performance metrics.

benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_without_outliers]created

1 year ago

, last run

8 days ago

0

301

17.4 ms

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