benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]created
1 year ago
, last run8 days ago
0
409
9.3 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]created
1 year ago
, last run8 days ago
1
409
12.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]created
1 year ago
, last run8 days ago
0
412
9.3 ms
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-KmerTable]createdInstrumentation
1 year ago
, last run8 days ago
1
412
12.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]created
1 year ago
, last run8 days ago
0
409
10.3 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]createdInstrumentation
1 year ago
, last run8 days ago
1
409
13.4 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]createdInstrumentation
1 year ago
, last run8 days ago
0
412
10.3 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-KmerTable]createdInstrumentation
1 year ago
, last run8 days ago
1
412
13.3 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]created
1 year ago
, last run8 days ago
0
409
14.2 ms
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]createdInstrumentation
1 year ago
, last run8 days ago
0
409
17.3 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]created
1 year ago
, last run8 days ago
0
412
9.6 ms
benchmark_indexing_from_sequences[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-KmerTable]createdInstrumentation
1 year ago
, last run8 days ago
1
412
12.6 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[11*11*1*1***111]createdInstrumentation
1 year ago
, last run8 days ago
0
409
185.8 µs
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[None]createdInstrumentation
1 year ago
, last run8 days ago
1
412
151.8 µs
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]createdInstrumentation
1 year ago
, last run8 days ago
0
409
621.3 µs
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-None]createdInstrumentation
1 year ago
, last run8 days ago
0
409
574 µs
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-11*11*1*1***111]createdInstrumentation
1 year ago
, last run8 days ago
0
409
537.4 µs
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-None]createdInstrumentation
1 year ago
, last run8 days ago
0
412
493.3 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]created
1 year ago
, last run8 days ago
0
409
541.8 µs
benchmark_match_kmer_selection[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-None]createdInstrumentation
1 year ago
, last run8 days ago
0
409
542.3 µs
benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]createdInstrumentation
1 year ago
, last run8 days ago
0
409
459.8 µs
benchmark_match_kmer_selection[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-None]createdInstrumentation
1 year ago
, last run8 days ago
0
412
462.2 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]created
1 year ago
, last run8 days ago
0
409
12.9 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-None]createdInstrumentation
1 year ago
, last run8 days ago
0
409
12.9 ms
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-11*11*1*1***111]createdInstrumentation
1 year ago
, last run8 days ago
0
409
14.9 ms
benchmark_match_table[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-None]createdInstrumentation
1 year ago
, last run8 days ago
0
412
15.1 ms
benchmark_score_threshold_rule[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[11*11*1*1***111]createdInstrumentation
1 year ago
, last run8 days ago
0
409
2 s
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[None]createdInstrumentation
1 year ago
, last run8 days ago
0
412
2 s
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]created
1 year ago
, last run8 days ago
0
409
7.4 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-None]createdInstrumentation
1 year ago
, last run8 days ago
0
409
7.4 ms
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-11*11*1*1***111]createdInstrumentation
1 year ago
, last run8 days ago
0
409
38.9 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-None]createdInstrumentation
1 year ago
, last run8 days ago
0
412
38.9 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_3di]createdInstrumentation
11 months ago
, last run8 days ago
0
354
10.4 ms
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_protein_blocks]createdInstrumentation
11 months ago
, last run8 days ago
1
354
6.6 ms
benchmark_lddt[False-all]
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-all]createdInstrumentation
11 months ago
, last run8 days ago
0
269
226.8 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-atom]createdInstrumentation
11 months ago
, last run8 days ago
0
269
313.6 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-chain]createdInstrumentation
11 months ago
, last run8 days ago
0
269
319.7 ms
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-residue]createdInstrumentation
11 months ago
, last run8 days ago
0
269
325 ms
benchmark_lddt[True-all]
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-all]createdInstrumentation
11 months ago
, last run8 days ago
0
269
882.2 ms
benchmark_lddt[True-atom]
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-atom]createdInstrumentation
11 months ago
, last run8 days ago
0
269
1.9 s
benchmark_lddt[True-chain]
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-chain]createdInstrumentation
11 months ago
, last run8 days ago
0
269
1.9 s
benchmark_lddt[True-residue]
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-residue]createdInstrumentation
11 months ago
, last run8 days ago
0
269
1.9 s
benchmark_compress
benchmarks/structure/benchmark_pdbx.py::benchmark_compresscreatedInstrumentation
11 months ago
, last run8 days ago
2
393
675 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[bcif]createdInstrumentation
1 year ago
, last run8 days ago
0
444
118.5 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[cif]createdInstrumentation
1 year ago
, last run8 days ago
1
444
107 ms
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-False]createdInstrumentation
1 year ago
, last run8 days ago
0
442
19.6 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-True]createdInstrumentation
1 year ago
, last run8 days ago
1
442
83.7 ms
benchmark_get_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-False]createdInstrumentation
1 year ago
, last run8 days ago
2
442
59.7 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-True]createdInstrumentation
1 year ago
, last run8 days ago
2
442
125.8 ms
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[bcif]createdInstrumentation
1 year ago
, last run8 days ago
2
444
106.9 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[cif]createdInstrumentation
1 year ago
, last run8 days ago
1
444
201.7 ms
benchmark_set_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-False]createdInstrumentation
1 year ago
, last run8 days ago
1
442
7.8 ms
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-True]createdInstrumentation
1 year ago
, last run8 days ago
1
442
29.6 ms
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-False]createdInstrumentation
1 year ago
, last run8 days ago
1
442
104.4 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-True]createdInstrumentation
1 year ago
, last run8 days ago
1
442
128.4 ms
benchmark_superimpose[superimpose]
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose]createdInstrumentation
10 months ago
, last run8 days ago
0
268
2.5 ms
benchmark_superimpose[superimpose_homologs]
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_homologs]createdInstrumentation
10 months ago
, last run8 days ago
0
268
24.1 ms
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_structural_homologs]createdInstrumentation
10 months ago
, last run8 days ago
0
268
32.5 ms
benchmark_superimpose[superimpose_without_outliers]
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_without_outliers]createdInstrumentation
10 months ago
, last run8 days ago
0
268
17.3 ms