Benchmarks
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]created
5 months ago
, last run2 days ago
0
232
8.9 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]created
5 months ago
, last run2 days ago
0
232
11.3 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]created
5 months ago
, last run2 days ago
0
235
8.9 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-KmerTable]created
5 months ago
, last run2 days ago
0
235
11.3 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]created
5 months ago
, last run2 days ago
0
232
9.7 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]created
5 months ago
, last run2 days ago
0
232
12.1 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]created
5 months ago
, last run2 days ago
0
235
9.7 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-KmerTable]created
5 months ago
, last run2 days ago
0
235
12.1 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]created
5 months ago
, last run2 days ago
0
232
13.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]created
5 months ago
, last run2 days ago
0
232
15.9 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]created
5 months ago
, last run2 days ago
0
235
8.8 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-KmerTable]created
5 months ago
, last run2 days ago
0
235
10.1 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
184.1 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[None]created
5 months ago
, last acknowledgement2 months ago
1
235
194.9 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
617.6 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-None]created
5 months ago
, last run2 days ago
0
232
576.9 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
537.3 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-None]created
5 months ago
, last run2 days ago
0
235
497 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
546.7 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-None]created
5 months ago
, last run2 days ago
0
232
548.6 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
458.5 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-None]created
5 months ago
, last run2 days ago
0
235
461.9 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
13.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-None]created
5 months ago
, last run2 days ago
0
232
13.5 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
15.7 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-None]created
5 months ago
, last run2 days ago
0
235
15.5 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
2.2 s
benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[None]created
5 months ago
, last run2 days ago
0
235
2.2 s
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
7.2 ms
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-None]created
5 months ago
, last run2 days ago
0
232
7.3 ms
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-11*11*1*1***111]created
5 months ago
, last run2 days ago
0
232
37.4 ms
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-None]created
5 months ago
, last run2 days ago
0
235
35.6 ms
benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_3di]created
4 months ago
, last run2 days ago
0
177
13.4 ms
benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_protein_blocks]created
4 months ago
, last acknowledgement2 months ago
1
177
84.7 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-all]created
3 months ago
, last run2 days ago
0
92
211.8 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-atom]created
3 months ago
, last run2 days ago
0
92
293.7 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-chain]created
3 months ago
, last run2 days ago
0
92
300.8 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-residue]created
3 months ago
, last run2 days ago
0
92
305.8 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-all]created
3 months ago
, last run2 days ago
0
92
903.9 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-atom]created
3 months ago
, last run2 days ago
0
92
1.9 s
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-chain]created
3 months ago
, last run2 days ago
0
92
1.9 s
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-residue]created
3 months ago
, last run2 days ago
0
92
1.9 s
benchmarks/structure/benchmark_pdbx.py::benchmark_compresscreated
4 months ago
, last acknowledgement4 months ago
1
216
569.7 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[bcif]created
6 months ago
, last run2 days ago
0
267
99.7 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[cif]created
6 months ago
, last run2 days ago
0
267
91.9 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-False]created
6 months ago
, last run2 days ago
0
265
19.1 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-True]created
6 months ago
, last run2 days ago
0
265
74.3 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-False]created
6 months ago
, last acknowledgement4 months ago
1
265
50.9 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-True]created
6 months ago
, last acknowledgement4 months ago
1
265
105.7 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[bcif]created
6 months ago
, last run2 days ago
0
267
73.1 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[cif]created
6 months ago
, last run2 days ago
0
267
167.3 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-False]created
6 months ago
, last acknowledgement6 months ago
1
265
10.5 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-True]created
6 months ago
, last acknowledgement2 months ago
1
265
51.6 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-False]created
6 months ago
, last run2 days ago
0
265
97.1 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-True]created
6 months ago
, last acknowledgement2 months ago
1
265
141.4 ms
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose]created
3 months ago
, last run2 days ago
0
91
2.7 ms
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_homologs]created
3 months ago
, last run2 days ago
0
91
102.4 ms
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_structural_homologs]created
3 months ago
, last run2 days ago
0
91
41.1 ms
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_without_outliers]created
3 months ago
, last run2 days ago
0
91
16.4 ms