Benchmarks
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]created
7 months ago
, last run17 days ago
0
297
9.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]created
7 months ago
, last acknowledgement18 days ago
1
297
12.5 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]created
7 months ago
, last run17 days ago
0
300
9.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-KmerTable]created
7 months ago
, last acknowledgement18 days ago
1
300
12.5 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]created
7 months ago
, last run17 days ago
0
297
10.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]created
7 months ago
, last acknowledgement18 days ago
1
297
13.5 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]created
7 months ago
, last run17 days ago
0
300
10.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-KmerTable]created
7 months ago
, last acknowledgement18 days ago
1
300
13.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]created
7 months ago
, last run17 days ago
0
297
14.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]created
7 months ago
, last run17 days ago
0
297
17.4 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]created
7 months ago
, last run17 days ago
0
300
9.8 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-KmerTable]created
7 months ago
, last acknowledgement18 days ago
1
300
12.8 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
187.4 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[None]created
7 months ago
, last acknowledgement3 months ago
1
300
153 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
630.1 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-None]created
7 months ago
, last run17 days ago
0
297
582.5 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
546.9 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-None]created
7 months ago
, last run17 days ago
0
300
501.8 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
550.1 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-None]created
7 months ago
, last run17 days ago
0
297
553.2 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
469.5 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-None]created
7 months ago
, last run17 days ago
0
300
470.9 µs
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
12.9 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-None]created
7 months ago
, last run17 days ago
0
297
12.9 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
14.8 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-None]created
7 months ago
, last run17 days ago
0
300
15.3 ms
benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
2 s
benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[None]created
7 months ago
, last run17 days ago
0
300
2.1 s
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
7.4 ms
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-None]created
7 months ago
, last run17 days ago
0
297
7.4 ms
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-11*11*1*1***111]created
7 months ago
, last run17 days ago
0
297
38.9 ms
benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-None]created
7 months ago
, last run17 days ago
0
300
39.1 ms
benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_3di]created
5 months ago
, last run17 days ago
0
242
13.3 ms
benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_protein_blocks]created
5 months ago
, last acknowledgement3 months ago
1
242
8.9 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-all]created
5 months ago
, last run17 days ago
0
157
216.9 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-atom]created
5 months ago
, last run17 days ago
0
157
297.9 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-chain]created
5 months ago
, last run17 days ago
0
157
304.9 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[False-residue]created
5 months ago
, last run17 days ago
0
157
310.2 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-all]created
5 months ago
, last run17 days ago
0
157
907.6 ms
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-atom]created
5 months ago
, last run17 days ago
0
157
1.9 s
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-chain]created
5 months ago
, last run17 days ago
0
157
1.9 s
benchmarks/structure/benchmark_compare.py::benchmark_lddt[True-residue]created
5 months ago
, last run17 days ago
0
157
1.9 s
benchmarks/structure/benchmark_pdbx.py::benchmark_compresscreated
6 months ago
, last acknowledgement5 months ago
1
281
564.9 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[bcif]created
7 months ago
, last run17 days ago
0
332
110.2 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[cif]created
7 months ago
, last run17 days ago
0
332
91.8 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-False]created
7 months ago
, last run17 days ago
0
330
21.3 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-True]created
7 months ago
, last acknowledgement18 days ago
1
330
84.9 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-False]created
7 months ago
, last acknowledgement18 days ago
2
330
58.5 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-True]created
7 months ago
, last acknowledgement18 days ago
2
330
120.6 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[bcif]created
7 months ago
, last acknowledgement18 days ago
1
332
84.9 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[cif]created
7 months ago
, last run17 days ago
0
332
176.6 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-False]created
7 months ago
, last acknowledgement7 months ago
1
330
11.1 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-True]created
7 months ago
, last acknowledgement3 months ago
1
330
29.1 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-False]created
7 months ago
, last acknowledgement18 days ago
1
330
108 ms
benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-True]created
7 months ago
, last acknowledgement3 months ago
1
330
129.9 ms
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose]created
4 months ago
, last run17 days ago
0
156
2.6 ms
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_homologs]created
4 months ago
, last run17 days ago
0
156
23.8 ms
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_structural_homologs]created
4 months ago
, last run17 days ago
0
156
40.6 ms
benchmarks/structure/benchmark_superimpose.py::benchmark_superimpose[superimpose_without_outliers]created
4 months ago
, last run17 days ago
0
156
16.8 ms