Benchmarks

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benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]created

2 months ago

, last run

5 days ago

9.9 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]created

2 months ago

, last run

5 days ago

12.9 ms

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]created

2 months ago

, last run

5 days ago

9.9 ms

benchmark_indexing_from_kmer_selection[None-KmerTable]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmer_selection[None-KmerTable]created

2 months ago

, last run

5 days ago

12.9 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]created

2 months ago

, last run

5 days ago

10.8 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]created

2 months ago

, last run

5 days ago

13.9 ms

benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]created

2 months ago

, last run

5 days ago

10.7 ms

benchmark_indexing_from_kmers[None-KmerTable]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_kmers[None-KmerTable]created

2 months ago

, last run

5 days ago

13.8 ms

benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]created

2 months ago

, last run

5 days ago

14.2 ms

benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]created

2 months ago

, last run

5 days ago

17.3 ms

benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]created

2 months ago

, last run

5 days ago

9.7 ms

benchmark_indexing_from_sequences[None-KmerTable]benchmarks/sequence/align/benchmark_kmers.py::benchmark_indexing_from_sequences[None-KmerTable]created

2 months ago

, last run

5 days ago

12.8 ms

benchmark_kmer_decomposition[11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[11*11*1*1***111]created

2 months ago

, last run

5 days ago

185 µs

benchmark_kmer_decomposition[None]benchmarks/sequence/align/benchmark_kmers.py::benchmark_kmer_decomposition[None]created

2 months ago

, last run

5 days ago

154.4 µs

benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]created

2 months ago

, last run

5 days ago

624.7 µs

benchmark_match[BucketKmerTable(10000)-None]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[BucketKmerTable(10000)-None]created

2 months ago

, last run

5 days ago

578.6 µs

benchmark_match[KmerTable-11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-11*11*1*1***111]created

2 months ago

, last run

5 days ago

534.8 µs

benchmark_match[KmerTable-None]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match[KmerTable-None]created

2 months ago

, last run

5 days ago

491.7 µs

benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]created

2 months ago

, last run

5 days ago

553.4 µs

benchmark_match_kmer_selection[BucketKmerTable(10000)-None]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[BucketKmerTable(10000)-None]created

2 months ago

, last run

5 days ago

555.7 µs

benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]created

2 months ago

, last run

5 days ago

469.9 µs

benchmark_match_kmer_selection[KmerTable-None]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_kmer_selection[KmerTable-None]created

2 months ago

, last run

5 days ago

472.7 µs

benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]created

2 months ago

, last run

5 days ago

13 ms

benchmark_match_table[BucketKmerTable(10000)-None]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[BucketKmerTable(10000)-None]created

2 months ago

, last run

5 days ago

13 ms

benchmark_match_table[KmerTable-11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-11*11*1*1***111]created

2 months ago

, last run

5 days ago

14.9 ms

benchmark_match_table[KmerTable-None]benchmarks/sequence/align/benchmark_kmers.py::benchmark_match_table[KmerTable-None]created

2 months ago

, last run

5 days ago

14.9 ms

benchmark_score_threshold_rule[11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[11*11*1*1***111]created

2 months ago

, last run

5 days ago

2.1 s

benchmark_score_threshold_rule[None]benchmarks/sequence/align/benchmark_kmers.py::benchmark_score_threshold_rule[None]created

2 months ago

, last run

5 days ago

2.1 s

test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]created

2 months ago

, last run

5 days ago

7.3 ms

test_pickle_and_unpickle[BucketKmerTable(10000)-None]benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[BucketKmerTable(10000)-None]created

2 months ago

, last run

5 days ago

7.3 ms

test_pickle_and_unpickle[KmerTable-11*11*1*1***111]benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-11*11*1*1***111]created

2 months ago

, last run

5 days ago

39.9 ms

test_pickle_and_unpickle[KmerTable-None]benchmarks/sequence/align/benchmark_kmers.py::test_pickle_and_unpickle[KmerTable-None]created

2 months ago

, last run

5 days ago

40.2 ms

benchmark_structural_alphabet_methods[to_3di]benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_3di]created

21 days ago

, last run

5 days ago

13.2 ms

benchmark_structural_alphabet_methods[to_protein_blocks]benchmarks/structure/benchmark_alphabet.py::benchmark_structural_alphabet_methods[to_protein_blocks]created

21 days ago

, last run

5 days ago

8.8 ms

benchmark_compressbenchmarks/structure/benchmark_pdbx.py::benchmark_compresscreated

1 month ago

, last acknowledgement

1 month ago

565.6 ms

benchmark_deserialize_pdbx[bcif]benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[bcif]created

3 months ago

, last run

5 days ago

111

113.5 ms

benchmark_deserialize_pdbx[cif]benchmarks/structure/benchmark_pdbx.py::benchmark_deserialize_pdbx[cif]created

3 months ago

, last run

5 days ago

111

121.5 ms

benchmark_get_structure[bcif-False]benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-False]created

3 months ago

, last run

5 days ago

109

21.7 ms

benchmark_get_structure[bcif-True]benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[bcif-True]created

3 months ago

, last run

5 days ago

109

84.7 ms

benchmark_get_structure[cif-False]benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-False]created

3 months ago

, last acknowledgement

19 days ago

109

77.4 ms

benchmark_get_structure[cif-True]benchmarks/structure/benchmark_pdbx.py::benchmark_get_structure[cif-True]created

3 months ago

, last acknowledgement

19 days ago

109

139.8 ms

benchmark_serialize_pdbx[bcif]benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[bcif]created

3 months ago

, last run

5 days ago

111

86 ms

benchmark_serialize_pdbx[cif]benchmarks/structure/benchmark_pdbx.py::benchmark_serialize_pdbx[cif]created

3 months ago

, last run

5 days ago

111

181.3 ms

benchmark_set_structure[bcif-False]benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-False]created

3 months ago

, last acknowledgement

3 months ago

109

11.3 ms

benchmark_set_structure[bcif-True]benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[bcif-True]created

3 months ago

, last run

5 days ago

109

47.1 ms

benchmark_set_structure[cif-False]benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-False]created

3 months ago

, last run

5 days ago

109

106.9 ms

benchmark_set_structure[cif-True]benchmarks/structure/benchmark_pdbx.py::benchmark_set_structure[cif-True]created

3 months ago

, last run

5 days ago

109

146.3 ms

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