Comparing
padix-key:benchmark
(7506ab9
) withmain
(b777f30
)+12%
- Improvement
- 1
- Untouched
- 62
- New
- 35
Different runtime environments detected
Some benchmarks with significant performance changes were compared across different runtime environments, which may affect the accuracy of the results. Learn more about regression causes.Benchmarks
98 total
benchmark_connect[connect_via_distances]
benchmarks/structure/benchmark_bonds.pyN/A
N/A26.2 ms
benchmark_create_kmers
benchmarks/sequence/align/benchmark_kmer.pyN/A
N/A235.4 µs
benchmark_align_multiple
benchmarks/sequence/align/benchmark_multiple.pyN/A
N/A20.2 s
benchmark_conversion[as_array]
benchmarks/structure/benchmark_bonds.pyN/A
N/A116.1 µs
benchmark_align_pairwise[align_optimal]
benchmarks/sequence/align/benchmark_pairwise.pyN/A
N/A381.5 ms
benchmark_align_pairwise[align_banded]
benchmarks/sequence/align/benchmark_pairwise.pyN/A
N/A28.7 ms
benchmark_clustering[upgma]
benchmarks/sequence/benchmark_phylo.pyN/A
N/A490.2 µs
benchmark_align_pairwise[align_local_gapped]
benchmarks/sequence/align/benchmark_pairwise.pyN/A
N/A76.7 ms
benchmark_decode
benchmarks/sequence/benchmark_alphabet.pyN/A
N/A3.4 ms
benchmark_clustering[neighbor_joining]
benchmarks/sequence/benchmark_phylo.pyN/A
N/A624.7 µs
benchmark_encode
benchmarks/sequence/benchmark_alphabet.pyN/A
N/A183 µs
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py+1%
7 ms6.9 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+1%
186.6 µs185.4 µs
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
18.5 ms18.4 ms
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
15.2 ms15.1 ms
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
104 ms103.9 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
13 ms13 ms
benchmark_get_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
58.7 ms58.6 ms
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py0%
322.9 ms322.7 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
200.4 ms200.3 ms
benchmark_lddt[True-chain]
benchmarks/structure/benchmark_compare.py0%
1.9 s1.9 s
benchmark_lddt[True-residue]
benchmarks/structure/benchmark_compare.py0%
1.9 s1.9 s
benchmark_lddt[False-all]
benchmarks/structure/benchmark_compare.py0%
227.1 ms227 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.4 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.4 ms
Commits
Click on a commit to change the comparison rangeBase
main
b777f30
+11.62%
Add benchmarks for modules to be replaced by Rust code
7506ab9
2 months ago
by padix-key