padix-key:benchmark - Branch - biotite-dev/biotite

Add benchmarks for modules to be replaced by Rust code

#875Merged

Comparing

padix-key:benchmark

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7506ab9

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main

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+12%

Improvement: 1

Untouched: 62

New: 35

Different runtime environments detected

Some benchmarks with significant performance changes were compared across different runtime environments, which may affect the accuracy of the results. Learn more about regression causes.

Benchmarks

98 total

benchmark_kmer_decomposition[None]

benchmarks/sequence/align/benchmark_kmers.py

+12%

151.2 µs135.5 µs

benchmark_get_bonds

benchmarks/structure/benchmark_bonds.py

N/A

N/A15.5 ms

benchmark_cell_list_compute_contacts

benchmarks/structure/benchmark_celllist.py

N/A

N/A11.6 ms

benchmark_cell_list_creation

benchmarks/structure/benchmark_celllist.py

N/A

N/A941.5 µs

benchmark_partial_charges

benchmarks/structure/benchmark_charges.py

N/A

N/A731.4 µs

benchmark_get_coord

benchmarks/structure/benchmark_pdb.py

N/A

N/A4.2 ms

benchmark_get_structure_with_bonds

benchmarks/structure/benchmark_pdb.py

N/A

N/A78.4 ms

benchmark_get_remark

benchmarks/structure/benchmark_pdb.py

N/A

N/A758.3 µs

benchmark_get_structure

benchmarks/structure/benchmark_pdb.py

N/A

N/A20.2 ms

benchmark_read

benchmarks/structure/benchmark_pdb.py

N/A

N/A3.5 ms

benchmark_set_structure

benchmarks/structure/benchmark_pdb.py

N/A

N/A34.2 ms

benchmark_set_structure_with_bonds

benchmarks/structure/benchmark_pdb.py

N/A

N/A34.2 ms

benchmark_sasa

benchmarks/structure/benchmark_sasa.py

N/A

N/A248.8 ms

benchmark_conversion[get_all_bonds]

benchmarks/structure/benchmark_bonds.py

N/A

N/A180.7 µs

benchmark_find_rotatable_bonds

benchmarks/structure/benchmark_bonds.py

N/A

N/A43.9 ms

benchmark_get_all_bonds

benchmarks/structure/benchmark_bonds.py

N/A

N/A182.4 µs

benchmark_similar_kmers

benchmarks/sequence/align/benchmark_kmer.py

N/A

N/A319.3 µs

benchmark_conversion[as_array]

benchmarks/structure/benchmark_bonds.py

N/A

N/A116.1 µs

benchmark_find_connected

benchmarks/structure/benchmark_bonds.py

N/A

N/A304.3 µs

benchmark_concatenate

benchmarks/structure/benchmark_bonds.py

N/A

N/A317.7 µs

benchmark_conversion[adjacency_matrix]

benchmarks/structure/benchmark_bonds.py

N/A

N/A1.4 ms

benchmark_create_kmers

benchmarks/sequence/align/benchmark_kmer.py

N/A

N/A235.4 µs

benchmark_connect[connect_via_distances]

benchmarks/structure/benchmark_bonds.py

N/A

N/A26.2 ms

benchmark_conversion[as_graph]

benchmarks/structure/benchmark_bonds.py

N/A

N/A8.7 ms

benchmark_conversion[bond_type_matrix]

benchmarks/structure/benchmark_bonds.py

N/A

N/A1.4 ms

Commits

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Base

main

b777f30

+11.62%

Add benchmarks for modules to be replaced by Rust code

7506ab9

2 months ago

by padix-key

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