GitHub Actions run on branch revindex_get_match_names - sourmash-bio/sourmash

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CPU Simulation

5 days ago 1ea9c23 revindex_get_match_names pull_request

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WIP: add code to get matches w/o full signatures

#3863

revindex_get_match_names

5 days ago

CPU Simulation

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Suggested base runs:

Benchmarks

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash

12.1 ms

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

189.3 µs

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

401.3 ms

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

18.8 µs

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.1 ms

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

93.2 µs

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

16.2 µs

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

1.3 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

10.5 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.1 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

401 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.1 ms

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

676.7 µs

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

401 ms

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

891.8 µs

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

9.5 ms

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

8.2 ms

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

694.9 µs

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

911.7 µs

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash

14.7 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

400.9 ms

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