sourmash-bio/sourmash - CodSpeed

sourmash

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update_docs_v5

2 days ago

WIP: start writing v4->v5 migration docs

update_docs_v5

2 days ago

Merge branch 'latest' of github.com:sourmash-bio/sourmash into update_tax_abund

update_tax_abund

2 days ago

MRG: update `sig manifest` default rebuilding behavior for v5. (#3074) NOTE: PR into https://github.com/sourmash-bio/sourmash/pull/3072 This PR changes the default behavior of `sig manifest` for sourmash v5 to, by default, _not_ rebuild the manifest for collections. This is also further exploration of the v4/v5 cli version fixtures in https://github.com/sourmash-bio/sourmash/pull/3072. * Fixes https://github.com/sourmash-bio/sourmash/issues/2034 --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

latest

2 days ago

MRG: try setting up --v4 and --v5 behavior differences for `sig check` (#3072) This PR adds `--v5` functionality to `sig collect` and `sig check`, switching the default behavior (when `--v5` is specified) over to the new `--relpath` functionality per https://github.com/sourmash-bio/sourmash/issues/3071. This PR is a proposed step along the road to support a sourmash v5 release :tada:. As part of this, the PR adds support for `--v4` and `--v5` command-line arguments to `sig check` and `sig collect`, along with test fixtures and a `version=...` argument to `runtmp.sourmash`. `--v4` would retain the current default v4 behavior, while `--v5` would switch the behavior over to the new, exciting (proposed) sourmash v5 behavior. * Fixes https://github.com/sourmash-bio/sourmash/issues/3071 * Ref: https://github.com/sourmash-bio/sourmash/issues/3076 --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

latest

2 days ago

Merge branch 'latest' into v5_sig_manifest

v5_sig_manifest

2 days ago

v5_sig_manifest

2 days ago

Merge branch 'latest' of github.com:sourmash-bio/sourmash into start_v5

start_v5

2 days ago

Active Branches

WIP: start writing v4->v5 migration docs

last run

2 days ago

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WIP: adjust warnings around tax abund and provide v5 upgrades to `tax metagenome`

last run

2 days ago

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Build(deps): Bump md5 from 0.7.0 to 0.8.0

last run

2 days ago

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