GitHub Actions run on branch update_docs_v5 - sourmash-bio/sourmash

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2 days ago addda24 update_docs_v5

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WIP: start writing v4->v5 migration docs

#3721

update_docs_v5

2 days ago

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Benchmarks

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase

14.4 ms

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection

9.5 ms

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci1

914.8 µs

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size

16.2 µs

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid

408.7 ms

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph

187.1 µs

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid

14.4 ms

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree

18.4 ms

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci0

893.2 µs

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers

408.7 ms

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph

93.3 µs

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers

10.7 ms

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph

1.4 ms

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection

18.8 µs

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers

409.1 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase

408.8 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers

14.4 ms

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci1

696.2 µs

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci0

676.4 µs

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size

8.2 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree

18.5 ms

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