WIP: adjust warnings around tax abund and provide v5 upgrades to `tax metagenome`
#3711Comparing
update_tax_abund
(c3053e2
) withlatest
(24cd8ca
)0%
- Improvements
- 0
- Regressions
- 0
- Untouched
- 21
- New
- 0
- Dropped
- 0
- Ignored
- 0
Benchmarks
Passed
load nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph0%
187.1 µs
187.1 µs
large intersection_size btree
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree0%
18.4 ms
18.4 ms
large intersection
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection0%
9.5 ms
9.5 ms
large intersection btree
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree0%
18.5 ms
18.5 ms
invalid kmers
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers0%
409.1 ms
409.1 ms
lowercase
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase0%
408.8 ms
408.8 ms
large intersection_size
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size0%
8.2 ms
8.2 ms
valid
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid0%
408.7 ms
408.7 ms
force with valid kmers
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers0%
408.7 ms
408.7 ms
force with valid kmers
src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers0%
14.4 ms
14.4 ms
save compressed nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph0%
1.4 ms
1.4 ms
invalid kmers
src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers0%
10.7 ms
10.7 ms
valid
src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid0%
14.4 ms
14.4 ms
lowercase
src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase0%
14.4 ms
14.4 ms
abund0_ani_ci1
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci10%
696.2 µs
696.3 µs
abund0_ani_ci0
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci00%
676.4 µs
676.4 µs
abund1_ani_ci1
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci10%
914.8 µs
914.9 µs
abund1_ani_ci0
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci00%
893.1 µs
893.2 µs
save nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph0%
93.3 µs
93.3 µs
intersection
src/core/benches/minhash.rs::minhash::intersection::minhash::intersection0%
18.8 µs
18.8 µs
intersection_size
src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size0%
16.2 µs
16.2 µs
Commits
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latest
24cd8ca
+1%
Merge branch 'latest' of github.com:sourmash-bio/sourmash into update_tax_abund
863ff08
6 days ago
by ctb0%
[pre-commit.ci] auto fixes from pre-commit.com hooks
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1372fd1
6 days ago
by pre-commit-ci[bot]0%
fix basics
9b227c5
6 days ago
by ctb0%
[pre-commit.ci] auto fixes from pre-commit.com hooks
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23dd706
6 days ago
by pre-commit-ci[bot]0%
add v4/v5 behavior into tests
0f52a8f
5 days ago
by ctb0%
[pre-commit.ci] auto fixes from pre-commit.com hooks
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23738ca
5 days ago
by pre-commit-ci[bot]-1%
Merge branch 'v5_sig_manifest' into update_tax_abund
7df8cf1
5 days ago
by ctb0%
finish tricky tests
bb1fc32
4 days ago
by ctb0%
[pre-commit.ci] auto fixes from pre-commit.com hooks
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1d55741
4 days ago
by pre-commit-ci[bot]0%
Merge branch 'update_tax_abund' of github.com:sourmash-bio/sourmash into update_tax_abund
7b8733c
3 days ago
by ctb0%
[pre-commit.ci] auto fixes from pre-commit.com hooks
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b0dfb27
3 days ago
by pre-commit-ci[bot]0%
more comments; fix
402d3bb
3 days ago
by ctb0%
[pre-commit.ci] auto fixes from pre-commit.com hooks
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8034fde
3 days ago
by pre-commit-ci[bot]0%
Merge branch 'latest' of github.com:sourmash-bio/sourmash into update_tax_abund
c3053e2
3 days ago
by ctb