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EXP: skipmers(#3395)

Comparing
try-skipmers
(
d7f59cf
) with
latest
(
94d37f9
)
0%
IMPROVEMENTS
0
REGRESSIONS
0
UNTOUCHED
21
NEW
0
DROPPED
0
IGNORED
0

Benchmarks

Passed

lowercase
src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase
0%
14.2 ms
14.1 ms
force with valid kmers
src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers
0%
14.2 ms
14.1 ms
valid
src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid
0%
14.2 ms
14.1 ms
lowercase
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase
0%
401.9 ms
400.5 ms
force with valid kmers
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers
0%
402 ms
400.7 ms
valid
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid
0%
402 ms
400.6 ms
invalid kmers
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers
0%
402.5 ms
401.1 ms
invalid kmers
src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers
0%
10.5 ms
10.5 ms
large intersection
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection
0%
10.6 ms
10.6 ms
large intersection_size
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size
0%
9.3 ms
9.3 ms
save compressed nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph
0%
1.4 ms
1.4 ms
large intersection btree
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree
0%
19.4 ms
19.4 ms
intersection
src/core/benches/minhash.rs::minhash::intersection::minhash::intersection
0%
20.3 µs
20.3 µs
large intersection_size btree
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree
0%
19 ms
19 ms
save nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph
0%
93.2 µs
93.2 µs
load nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph
0%
187.3 µs
187.3 µs
abund0_ani_ci0
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci0
0%
717 µs
717.1 µs
abund1_ani_ci1
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci1
0%
960.1 µs
960.2 µs
abund0_ani_ci1
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci1
0%
736.8 µs
736.9 µs
abund1_ani_ci0
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci0
0%
938.5 µs
938.7 µs
intersection_size
src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size
0%
18.2 µs
18.3 µs

Commits

Click on a commit to change the comparison range
base
latest
94d37f9
-55%
Merge branch 'latest' into try-skipmers
117cd0d
10 days ago
by bluegenes
+55%
use hash fn encoding instead; init testing
2bac5fd
9 days ago
by bluegenes
0%
fix test
fdd1a44
8 days ago
by bluegenes
0%
Merge branch 'latest' into try-skipmers
55435d1
8 days ago
by bluegenes
0%
cont
ff33f7b
3 days ago
by bluegenes
0%
test
11978ed
3 days ago
by bluegenes
0%
skipmers must be at least ksize 3
2de520e
3 days ago
by bluegenes
0%
Merge branch 'latest' into try-skipmers
cb2e7e1
3 days ago
by bluegenes
0%
clippy fix
d4a6200
3 days ago
by bluegenes
0%
Merge branch 'latest' into try-skipmers
d7f59cf
17 hours ago
by bluegenes
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