revindex_get_match_names - Branch - sourmash-bio/sourmash

WIP: add code to get matches w/o full signatures

#3863

Comparing

revindex_get_match_names

(

4fa9616

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latest

(

cc4ab0e

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Untouched: 21

Benchmarks

Passed

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

93.2 µs93.2 µs

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

695 µs694.9 µs

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

911.9 µs911.8 µs

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

676.8 µs676.7 µs

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

891.9 µs891.8 µs

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

10.5 ms10.5 ms

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

1.3 ms1.3 ms

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

8.2 ms8.2 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

400.9 ms400.9 ms

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

401 ms401 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

401.3 ms401.3 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

401 ms401 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.1 ms14.1 ms

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

18.8 µs18.8 µs

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash

12.1 ms12.1 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.1 ms14.1 ms

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.1 ms14.1 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash

14.7 ms14.7 ms

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

9.5 ms9.5 ms

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

189.3 µs189.3 µs

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

16.2 µs16.2 µs

Commits

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Base

latest

cc4ab0e

WIP: add code to get matches w/o full signatures

1ea9c23

6 days ago

by ctb

-0.01%

[pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci

4fa9616

5 days ago

by pre-commit-ci[bot]

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