picklist-collect - Branch - sourmash-bio/sourmash

MRG: add picklist to sig collect

#3805

Comparing

picklist-collect

(

bd890dc

) with

latest

(

dab49a4

)

Untouched: 21

Benchmarks

Passed

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

189.1 µs189.1 µs

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

676.8 µs676.8 µs

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

915.5 µs915.5 µs

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

697 µs697 µs

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash

18.4 ms18.4 ms

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

9.5 ms9.5 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash

18.5 ms18.5 ms

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

403.1 ms403.1 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

403 ms403 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

403.1 ms403.1 ms

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

8.2 ms8.2 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

403.6 ms403.6 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

10.7 ms10.7 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.4 ms14.4 ms

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.4 ms14.4 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.4 ms14.4 ms

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

1.4 ms1.4 ms

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

893.4 µs893.5 µs

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

93.3 µs93.3 µs

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

18.8 µs18.8 µs

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

16.2 µs16.2 µs

Commits

Click on a commit to change the comparison range

Base

latest

dab49a4

-0.02%

[pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci

89a3735

1 month ago

by pre-commit-ci[bot]

+0.02%

add tests

e0f1876

1 month ago

by bluegenes

only report picklist if picklist exists

d21cc79

1 month ago

by bluegenes

-0.02%

Merge branch 'latest' into picklist-collect

bd890dc

12 days ago

by ctb

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