lirber/rocksdb_storage - Branch - sourmash-bio/sourmash

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feat: RocksDB storage and self-contained RevIndex with internal storage(#3250)

Merged

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da76ba9

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f621726

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IMPROVEMENTS: 0

REGRESSIONS: 0

UNTOUCHED: 21

NEW: 0

DROPPED: 0

IGNORED: 0

Benchmarks

Passed

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size

15.4 µs

15.3 µs

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci1

581.5 µs

581.4 µs

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci1

793.5 µs

793.4 µs

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph

187 µs

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection

18.2 µs

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci0

560.5 µs

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size

7.5 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree

18 ms

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection

9.1 ms

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci0

770.9 µs

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph

1.4 ms

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph

93.1 µs

93.2 µs

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers

396.8 ms

398.2 ms

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid

396.4 ms

397.8 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers

396.4 ms

397.8 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase

396.3 ms

397.7 ms

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree

-1%

17.8 ms

18 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers

-2%

13.9 ms

14.2 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase

-2%

13.9 ms

14.2 ms

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid

-2%

13.9 ms

14.2 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers

-2%

10.3 ms

10.5 ms

Commits

Click on a commit to change the comparison range

base

latest

f621726

cover path functions for rocksdb storage

600915a

2 months ago

by luizirber

impl load for memstorage

cb14921

2 months ago

by luizirber

cleanup ahash deps

add106d

2 months ago

by luizirber

Add 0.15.0 changelog entry

6e5780a

2 months ago

by luizirber

update colored dep, remove atty sec warning

da76ba9

2 months ago

by luizirber

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