lirber/bw_resume - Branch - sourmash-bio/sourmash

Implement resumability for revindex

#3275Merged

Comparing

lirber/bw_resume

(

2a3a14f

) with

latest

(

8c9dfce

)

Improvements: 0

Regressions: 0

Untouched: 21

New: 0

Dropped: 0

Ignored: 0

Benchmarks

Passed

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection

18.2 µs

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph

186.9 µs

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid

14.2 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers

10.5 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase

14.2 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers

14.2 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers

398.2 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers

397.8 ms

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid

397.8 ms

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size

15.4 µs

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase

397.7 ms

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection

9.1 ms

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size

7.5 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree

18 ms

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree

18 ms

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci1

581.6 µs

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci0

560.6 µs

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph

1.4 ms

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci1

793.6 µs

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci0

771 µs

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph

93.1 µs

93.2 µs

Commits

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Base

latest

8c9dfce

allow in-place modification of V0 revindex

2a3a14f

4 months ago

by luizirber

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