lirber/sig_from_reader - Branch - sourmash-bio/sourmash

Refactor: Use to_writer/from_reader across the codebase

#3443Merged

Comparing

lirber/sig_from_reader

(

32950d7

) with

latest

(

f4f5187

)

Improvements: 0

Regressions: 0

Untouched: 21

New: 0

Dropped: 0

Ignored: 0

Benchmarks

Passed

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection

20.3 µs

20.2 µs

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci1

736.7 µs

736.6 µs

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci1

960 µs

959.9 µs

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci0

717 µs

716.9 µs

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci0

938.6 µs

938.5 µs

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree

19.4 ms

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree

19 ms

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid

14.2 ms

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size

18.3 µs

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size

9.3 ms

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph

93.3 µs

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase

14.2 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers

402.4 ms

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid

402 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase

401.9 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers

402 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers

10.5 ms

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection

10.6 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers

14.2 ms

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph

1.4 ms

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph

187.3 µs

Commits

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Base

latest

f4f5187

limit usage of serde_json across the codebase

32950d7

6 days ago

by luizirber

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