lineage - Branch - sourmash-bio/sourmash

[MRG] Lineage methods to allow easier pangenomic ranktable generation

#3837

Comparing

lineage

(

37d7e1b

) with

latest

(

d2096c0

)

Untouched: 21

Benchmarks

Passed

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

189.1 µs189.1 µs

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

1.4 ms1.4 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.4 ms14.4 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash

18.5 ms18.5 ms

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash

18.4 ms18.4 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

403.6 ms403.6 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

403 ms403 ms

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

16.2 µs16.2 µs

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

8.2 ms8.2 ms

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

676.9 µs676.9 µs

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

93.3 µs93.3 µs

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

697.1 µs697.1 µs

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

9.5 ms9.5 ms

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

18.8 µs18.8 µs

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

403.1 ms403.1 ms

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

403.1 ms403.1 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.4 ms14.4 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

10.7 ms10.7 ms

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.4 ms14.4 ms

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

915.5 µs915.5 µs

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

893.5 µs893.5 µs

Commits

Click on a commit to change the comparison range

Base

latest

d2096c0

-0.02%

fixing tests to match formatting (also this code ran without issue)

7731167

18 days ago

by ccbaumler

+0.02%

[pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci

37d7e1b

18 days ago

by pre-commit-ci[bot]

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