haoyu-haoyu:fix/lca-repr-none - Branch - sourmash-bio/sourmash

fix: do not display None in LCA_Database repr

#3923Merged

Comparing

haoyu-haoyu:fix/lca-repr-none

(

74d0b73

) with

latest

(

398e31c

)

Untouched: 21

Benchmarks

21 total

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

1.7 ms1.7 ms

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

189.5 µs189.5 µs

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.3 ms14.3 ms

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.3 ms14.3 ms

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

18.8 µs18.8 µs

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

407.8 ms407.8 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

407.7 ms407.7 ms

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

908.5 µs908.5 µs

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

127 µs127 µs

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

676.5 µs676.5 µs

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

16.2 µs16.2 µs

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

10.7 ms10.7 ms

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash

12 ms12 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash

14.7 ms14.7 ms

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

694 µs694 µs

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

889.8 µs889.8 µs

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

407.8 ms407.8 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

408.2 ms408.2 ms

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

9.5 ms9.5 ms

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

8.2 ms8.2 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.3 ms14.3 ms

Commits

Click on a commit to change the comparison range

Base

latest

398e31c

-0.01%

Merge branch 'latest' into fix/lca-repr-none

d268652

1 month ago

by ctb

+0.01%

Merge branch 'latest' into fix/lca-repr-none

74d0b73

1 month ago

by ctb

Home Terms Privacy Docs