haoyu-haoyu:feat/enable-doctests - Branch - sourmash-bio/sourmash

feat(tests): enable --doctest-modules in pytest configuration

#3922Merged

Comparing

haoyu-haoyu:feat/enable-doctests

(

a7d0b5b

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latest

(

64e527f

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Untouched: 21

Benchmarks

21 total

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

1.7 ms1.7 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

10.7 ms10.7 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.3 ms14.3 ms

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.3 ms14.3 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence

14.3 ms14.3 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

408.4 ms408.4 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

407.9 ms407.9 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

408 ms408 ms

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein

408 ms408 ms

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

187.4 µs187.4 µs

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

16.2 µs16.2 µs

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash

8.2 ms8.2 ms

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

9.5 ms9.5 ms

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash

12 ms12 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash

14.7 ms14.7 ms

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

889.6 µs889.7 µs

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

908.1 µs908.2 µs

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

693.7 µs693.8 µs

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats

676.4 µs676.4 µs

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph

93.1 µs93.1 µs

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash

18.8 µs18.8 µs

Commits

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Base

latest

64e527f

+0.34%

fix: add src/sourmash to testpaths for doctest discovery

b3df4d9

2 months ago

by haoyu-haoyu

-0.35%

Merge branch 'latest' into feat/enable-doctests

a7d0b5b

1 month ago

by ctb

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