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MRG: change `sig_from_record` to use scaled from `Record` to downsample

#3387Merged
Comparing
fix_sig_from_record
(
978ae43
) with
latest
(
c6cadb4
)
CodSpeed Performance Gauge
0%
Improvements
0
Regressions
0
Untouched
21
New
0
Dropped
0
Ignored
0

Benchmarks

Passed

save nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph
CodSpeed Performance Gauge
0%
93.3 µs
93.2 µs
abund0_ani_ci0
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci0
CodSpeed Performance Gauge
0%
717.1 µs
717.1 µs
abund1_ani_ci0
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci0
CodSpeed Performance Gauge
0%
938.6 µs
938.5 µs
save compressed nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph
CodSpeed Performance Gauge
0%
1.4 ms
1.4 ms
load nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph
CodSpeed Performance Gauge
0%
187.3 µs
187.3 µs
large intersection_size
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size
CodSpeed Performance Gauge
0%
9.3 ms
9.3 ms
force with valid kmers
src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers
CodSpeed Performance Gauge
0%
14.2 ms
14.2 ms
intersection
src/core/benches/minhash.rs::minhash::intersection::minhash::intersection
CodSpeed Performance Gauge
0%
20.3 µs
20.3 µs
intersection_size
src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size
CodSpeed Performance Gauge
0%
18.3 µs
18.3 µs
large intersection
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection
CodSpeed Performance Gauge
0%
10.6 ms
10.6 ms
large intersection_size btree
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree
CodSpeed Performance Gauge
0%
19 ms
19 ms
large intersection btree
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree
CodSpeed Performance Gauge
0%
19.4 ms
19.4 ms
lowercase
src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase
CodSpeed Performance Gauge
0%
14.2 ms
14.2 ms
valid
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid
CodSpeed Performance Gauge
0%
402 ms
402 ms
force with valid kmers
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers
CodSpeed Performance Gauge
0%
402 ms
402 ms
lowercase
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase
CodSpeed Performance Gauge
0%
401.9 ms
401.9 ms
invalid kmers
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers
CodSpeed Performance Gauge
0%
402.5 ms
402.5 ms
valid
src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid
CodSpeed Performance Gauge
0%
14.2 ms
14.2 ms
abund1_ani_ci1
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci1
CodSpeed Performance Gauge
0%
960.1 µs
960.1 µs
invalid kmers
src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers
CodSpeed Performance Gauge
0%
10.5 ms
10.5 ms
abund0_ani_ci1
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci1
CodSpeed Performance Gauge
0%
736.9 µs
737 µs

Commits

Click on a commit to change the comparison range
Base
latest
c6cadb4
0%
EXP: change `sig_from_record` to use scaled from `Record` to downsample
94acff3
2 months ago
by ctb
0%
reset scaled on manifest after select
179075b
2 months ago
by ctb
0%
switch to retain_mut; add test
1dedb7a
2 months ago
by ctb
0%
add a check for scaled too
fb65e52
2 months ago
by ctb
0%
add self to authors list for rust code (not because of this PR, necessarily ;)
2c9a413
2 months ago
by ctb
0%
Update src/core/src/collection.rs Co-authored-by: Luiz Irber <luizirber@users.noreply.github.com>
8f9e573
2 months ago
by ctb
0%
debug to dbg
1c6941b
2 months ago
by ctb
0%
Merge branch 'latest' of github.com:sourmash-bio/sourmash into fix_sig_from_record
978ae43
2 months ago
by ctb
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