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MRG: when lingroups are provided, use them for `csv_summary`(#3311)

Merging
better-summarized-lingroups
(
cffbf38
) into
latest
(
26b50f3
)
0%
IMPROVEMENTS
0
REGRESSIONS
0
UNTOUCHED
21
NEW
0
DROPPED
0
IGNORED
0

Benchmarks

Passed

save nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph
0%
93.1 µs
93.1 µs
save compressed nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph
0%
1.4 ms
1.4 ms
invalid kmers
src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers
0%
10.4 ms
10.4 ms
lowercase
src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase
0%
14 ms
14 ms
valid
src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid
0%
14 ms
14 ms
force with valid kmers
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers
0%
399.2 ms
399.2 ms
large intersection btree
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree
0%
18.3 ms
18.3 ms
invalid kmers
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers
0%
399.6 ms
399.6 ms
valid
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid
0%
399.2 ms
399.2 ms
abund0_ani_ci0
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci0
0%
560.6 µs
560.6 µs
abund0_ani_ci1
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci1
0%
581.4 µs
581.4 µs
intersection
src/core/benches/minhash.rs::minhash::intersection::minhash::intersection
0%
18.3 µs
18.3 µs
intersection_size
src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size
0%
15.4 µs
15.4 µs
large intersection
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection
0%
9.1 ms
9.1 ms
large intersection_size
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size
0%
7.5 ms
7.5 ms
large intersection_size btree
src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree
0%
18.2 ms
18.2 ms
lowercase
src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase
0%
399.1 ms
399.1 ms
abund1_ani_ci1
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci1
0%
809.6 µs
809.6 µs
force with valid kmers
src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers
0%
14 ms
14 ms
abund1_ani_ci0
src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci0
0%
787.1 µs
787.1 µs
load nodegraph
src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph
0%
187.1 µs
187.1 µs

Commits

Click on a commit to change the comparison range
base
latest
26b50f3
0%
add note for LINgroup csv_summary; add file exts to docs
77c83c3
28 days ago
by bluegenes
0%
[pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci
acb8120
28 days ago
by pre-commit-ci[bot]
0%
Merge branch 'latest' into better-summarized-lingroups
25ab392
28 days ago
by bluegenes
0%
Merge branch 'latest' into better-summarized-lingroups
acd3f8a
19 days ago
by bluegenes
0%
allow csv_summary output for multiple queries
4855569
19 days ago
by bluegenes
0%
[pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci
0ddea9f
19 days ago
by pre-commit-ci[bot]
0%
Merge branch 'better-summarized-lingroups' of github.com:sourmash-bio/sourmash into better-summarized-lingroups
1c99db9
19 days ago
by bluegenes
0%
[pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci
2395db5
19 days ago
by pre-commit-ci[bot]
0%
Merge branch 'latest' into better-summarized-lingroups
95715dc
7 days ago
by bluegenes
0%
Merge branch 'latest' into better-summarized-lingroups
42a4a8f
6 days ago
by bluegenes
0%
clean up
cffbf38
6 days ago
by bluegenes
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