LucaCappelletti94:union_cardinality_method - Branch - sourmash-bio/sourmash

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Added union method to HLL(#3293)

Merged

Comparing

LucaCappelletti94:union_cardinality_method

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ed67c55

) with

latest

(

bc22970

)

IMPROVEMENTS: 0

REGRESSIONS: 0

UNTOUCHED: 21

NEW: 0

DROPPED: 0

IGNORED: 0

Benchmarks

Passed

abund0_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci0

560.6 µs

abund1_ani_ci0

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci0

770.9 µs

valid

src/core/benches/compute.rs::compute::add_sequence::add_sequence::valid

14.2 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::invalid kmers

10.5 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence::add_sequence::force with valid kmers

14.2 ms

force with valid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::force with valid kmers

397.8 ms

large intersection btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection btree

18 ms

valid

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::valid

397.8 ms

invalid kmers

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::invalid kmers

398.2 ms

intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection

18.2 µs

intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::intersection_size

15.4 µs

large intersection

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection

9.1 ms

large intersection_size

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size

7.5 ms

large intersection_size btree

src/core/benches/minhash.rs::minhash::intersection::minhash::large intersection_size btree

18 ms

save nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save nodegraph

93.2 µs

lowercase

src/core/benches/compute.rs::compute::add_sequence_protein::add_sequence_protein::lowercase

397.7 ms

save compressed nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::save compressed nodegraph

1.4 ms

lowercase

src/core/benches/compute.rs::compute::add_sequence::add_sequence::lowercase

14.2 ms

load nodegraph

src/core/benches/nodegraph.rs::nodegraph::save_load::nodegraph::load nodegraph

186.9 µs

abund1_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund1_ani_ci1

793.5 µs

abund0_ani_ci1

src/core/benches/gather.rs::gather::gather_stats_benchmarks::gather_stats::abund0_ani_ci1

581.5 µs

581.6 µs

Commits

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base

latest

bc22970

Formatted code

ed67c55

3 months ago

by LucaCappelletti94

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