pymmcore-plus/ome-writers - CodSpeed

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ci: update actions and prek autoupdate (#138) * ci: update actions, prek autoupdate, and test python 3.15 Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com> * ci: drop python 3.15 for now Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com> --------- Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>

main

1 day ago

ci: update actions and prek autoupdate (#138) * ci: update actions, prek autoupdate, and test python 3.15 Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com> * ci: drop python 3.15 for now Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com> --------- Co-authored-by: Claude Fable 5.1 <noreply@anthropic.com>

main

3 days ago

test: add a benchmark for time-sharded acquisitions

tlambert03:perf/shard-buffering

3 days ago

fix: retry buffered disk reads that hit a PermissionError A reader thread got PermissionError from view[...] on Windows CI, probably from opening a file while zarr renames it into place.

tlambert03:perf/shard-buffering

3 days ago

perf: buffer whole shards before writing in zarr backends Writing part of a shard rewrites the whole shard in tensorstore, zarr-python and zarrs-python. Hold frames in ChunkBuffer until a shard is complete, and keep them readable through OMEStream.view while they are buffered.

tlambert03:perf/shard-buffering

3 days ago

fix: name the companion file `{stem}.companion.ome` so Bio-Formats reads it (#140) Bio-Formats only recognizes OME-TIFF companion files ending in `.companion.ome`, so the old default `companion.ome` was opened with OMEXMLReader and every plane read back as zeros. Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>

main

6 days ago

fix: record the frames written for every position in multi-file OME-TIFF metadata

aaronkanzer:fix/tiff-multifile-position-metadata

6 days ago

perf: serialize the redundant-mode OME-XML once when preparing TIFF streams In redundant mode every file's full OME model is identical except for its root UUID at prepare time, so serialize the first one and swap in each file's UUID instead of calling to_xml() once per file (O(n^2)). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

tlambert03:perf/redundant-prepare

6 days ago

Latest Branches

+70%

perf: buffer whole shards before writing in zarr backends#142

3 days ago

5d09b9b

tlambert03:perf/shard-buffering

+1%

fix: record the frames written for every position in multi-file OME-TIFF metadata#139

9 days ago

8bfce4c

aaronkanzer:fix/tiff-multifile-position-metadata

+100%

perf: serialize the redundant-mode OME-XML once when preparing TIFF streams#141

6 days ago

e4178c8

tlambert03:perf/redundant-prepare

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