pymmcore-plus/ome-writers - CodSpeed

ome-writers

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feat: add `OMEStream.on()` to register callbacks for specific events (#96) * Implement MultiPositionArrayView for handling multiple position arrays - Added MultiPositionArrayView class to provide a read-only view of multiple position arrays as a single array. - Introduced validation for array shapes and position axis. - Implemented methods for indexing and retrieving data from the view. - Created a function to generate the array view from backend and acquisition settings. - Updated ArrayBackend to include a method for retrieving array-like objects. - Added LiveTiffStore for reading from TIFF files during acquisition. - Enhanced TiffBackend to support live viewing with LiveTiffStore. - Implemented tests for array view functionality and live TIFF viewing. * fix: handle ImportError for LiveTiffStore in tests * feat: add zarr dependency for live array-preview tests in tifffile * move import * fix: import LiveTiffStore conditionally in TiffBackend and update test for zarr dependency * remove tiff from benchmark * feat: rename, add more tests * comment out unbounded tests * more coverage on all the mandatory abc methods for zarr store 😓 * fix: update condition in test_array_view for expected_frames threshold * return benchmark * add wait * catch attribute error * add ndv example * skip testing example * feat: enhance AcquisitionView for async array access and update tests * feat: add notes on potential race conditions in LiveTiffStore and WriterThread * feat: optimize frame writing in WriterThread by reducing lock usage * refactor: invoke callbacks in thread * fix benchmark tool * bump yaozarrs * fix deps * bump barriers

main

8 hours ago

feat: add `OMEStream.on()` to register callbacks for specific events (#96) * Implement MultiPositionArrayView for handling multiple position arrays - Added MultiPositionArrayView class to provide a read-only view of multiple position arrays as a single array. - Introduced validation for array shapes and position axis. - Implemented methods for indexing and retrieving data from the view. - Created a function to generate the array view from backend and acquisition settings. - Updated ArrayBackend to include a method for retrieving array-like objects. - Added LiveTiffStore for reading from TIFF files during acquisition. - Enhanced TiffBackend to support live viewing with LiveTiffStore. - Implemented tests for array view functionality and live TIFF viewing. * fix: handle ImportError for LiveTiffStore in tests * feat: add zarr dependency for live array-preview tests in tifffile * move import * fix: import LiveTiffStore conditionally in TiffBackend and update test for zarr dependency * remove tiff from benchmark * feat: rename, add more tests * comment out unbounded tests * more coverage on all the mandatory abc methods for zarr store 😓 * fix: update condition in test_array_view for expected_frames threshold * return benchmark * add wait * catch attribute error * add ndv example * skip testing example * feat: enhance AcquisitionView for async array access and update tests * feat: add notes on potential race conditions in LiveTiffStore and WriterThread * feat: optimize frame writing in WriterThread by reducing lock usage * refactor: invoke callbacks in thread * fix benchmark tool * bump yaozarrs * fix deps * bump barriers

main

6 days ago

tlambert03:ndv-preview

7 days ago

tlambert03:ndv-preview

7 days ago

Merge branch 'main' into ndv-preview

tlambert03:ndv-preview

7 days ago

feat: expose tiff single/multi-file options in OmeTiffFormat (#97) * feat: expose tiff structure options to users * refactor * feat: update TIFF structure handling and metadata arrangement options * remove docs * nits

main

7 days ago

tlambert03:tiff-structure

7 days ago

tlambert03:ndv-preview

7 days ago

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