live-image-tracking-tools/geff - CodSpeed

live-image-tracking-tools

geff

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refactor: :art: Reorganize axis model and helper function Moved the axis model into its own file and moved the axes_from_list helper into the utils where it is exposed publicly. Also updated many imports to use the public access patterns rather than the private ones.

301-make-propmetadata-mandatory

35 minutes ago

Merge remote-tracking branch 'origin/main' into reorg-tests

reorg-tests

3 hours ago

Add a testing utility function for comparing two geffs on disk (#137) # Proposed Change This function checks that the types and shapes of the zarr arrays contained within a geff match between two different geffs. Also updates the networkx read/write consistency test to use this function. When we update the rest of the networkx tests to use fixtures, we should use this function there as well. # Types of Changes What types of changes does your code introduce? Delete those that do not apply. - Tests Which topics does your change affect? Delete those that do not apply. # Checklist Put an x in the boxes that apply. You can also fill these out after creating the PR. If you're unsure about any of them, don't hesitate to ask. We're here to help! This is simply a reminder of what we are going to look for before merging your code. - [x] I have read the [developer/contributing](../CONTRIBUTING) docs. - [x] I have added tests that prove that my feature works in various situations or tests the bugfix (if appropriate). - [ ] I have checked that I maintained or improved code coverage. - [x] I have written docstrings and checked that they render correctly. - [x] If I changed the specification, I have checked that any validation functions and tests reflect the changes. --------- Co-authored-by: Caroline Malin-Mayor <malinmayorc@janelia.hhmi.org> Co-authored-by: Georgeos Hardo <georgeoshardo@protonmail.com>

main

3 hours ago

Add missing spaces in dtype description (#303) # Proposed Change Just fixing typos from previous PR (#302 ) - [x] I have updated the GeffMetadata and the json schema using `pytest --update-schema` if necessary.

main

3 hours ago

Add missing spaces in dtype description

fix-typos

4 hours ago

279 update property metadata (#302) # Proposed Change Closes #279 as discussed with @lxenard. Needed for variable length properties implementation. I also moved PropMetadata to it's own file because _schema.py was getting very long and confusing. Next: #301 # Types of Changes What types of changes does your code introduce? Delete those that do not apply. - New feature or enhancement Which topics does your change affect? Delete those that do not apply. - Specification - Metadata # Checklist Put an x in the boxes that apply. You can also fill these out after creating the PR. If you're unsure about any of them, don't hesitate to ask. We're here to help! This is simply a reminder of what we are going to look for before merging your code. - [x] I have read the [developer/contributing](https://github.com/live-image-tracking-tools/geff/blob/main/CONTRIBUTING) docs. - [x] I have added tests that prove that my feature works in various situations or tests the bugfix (if appropriate). - [ ] I have checked that I maintained or improved code coverage. - [ ] I have written docstrings and checked that they render correctly by looking at the docs preview (link left as a comment on the PR). ## If you changed the specification - [x] I have checked that any validation functions and tests reflect the changes. - [x] I have updated the GeffMetadata and the json schema using `pytest --update-schema` if necessary. - [ ] I have updated docs/specification.md to reflect the change. - [ ] I have updated implementations to reflect the change. (This can happen in separate PRs on a feature branch, but must be complete before merging into main.)

main

17 hours ago

Fix np.bool issue

test-equiv-geff

22 hours ago

Update schema with new description of props dtype

279-update-property-metadata

22 hours ago

Active Branches

refactor: :art: Reorganize axis model and helper function

last run

35 minutes ago

×3.7

Reorganize tests to match new API organization

last run

3 hours ago

×3.7

Check units with pint

last run

5 days ago

-73%

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