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2 days ago ce13fc5 rust pull_requestCompare
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CompareReplace Cython code partially with Rust modules
#898
rust
2 days ago
CPU Simulation
101 total
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py15.1 ms
benchmark_encode
benchmarks/sequence/benchmark_alphabet.py153.5 µs
benchmark_match_table[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py15.1 ms
benchmark_get_a3m_alignments
benchmarks/sequence/benchmark_fasta.py560.3 ms
benchmark_score_threshold_rule[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py1.9 s
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py178.1 ms
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py1.9 s
benchmark_get_sequences[fasta_path1-ProteinSequence]
benchmarks/sequence/benchmark_fasta.py8.8 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py7.4 ms
benchmark_clustering[neighbor_joining]
benchmarks/sequence/benchmark_phylo.py623.4 µs
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py7.4 ms
benchmark_clustering[upgma]
benchmarks/sequence/benchmark_phylo.py486.5 µs
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py38.9 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py9.7 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py39.1 ms
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py6.6 ms
benchmark_align_multiple
benchmarks/sequence/align/benchmark_multiple.py19.2 s
benchmark_bond_list_creation
benchmarks/structure/benchmark_bonds.py267.3 µs
benchmark_align_pairwise[align_banded]
benchmarks/sequence/align/benchmark_pairwise.py28.1 ms
benchmark_concatenate
benchmarks/structure/benchmark_bonds.py203.6 µs
benchmark_align_pairwise[align_local_gapped]
benchmarks/sequence/align/benchmark_pairwise.py76.6 ms
benchmark_connect[connect_via_distances]
benchmarks/structure/benchmark_bonds.py2.6 ms
benchmark_align_pairwise[align_optimal]
benchmarks/sequence/align/benchmark_pairwise.py361.1 ms
benchmark_decode
benchmarks/sequence/benchmark_alphabet.py3.4 ms
benchmark_similar_kmers
benchmarks/sequence/align/benchmark_kmer.py318.4 µs