GitHub Actions run on branch padix-key:entity-id-annotation - biotite-dev/biotite

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CPU Simulation

14 days ago a8c23e2 padix-key:entity-id-annotation pull_request

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Add optional `entity_id` annotation

#894

padix-key:entity-id-annotation

14 days ago

CPU Simulation

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Suggested base runs: •

98 total

benchmark_create_kmers

benchmarks/sequence/align/benchmark_kmer.py

232.3 µs

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.2 ms

benchmark_score_threshold_rule[11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

2 s

benchmark_match_table[KmerTable-None]

benchmarks/sequence/align/benchmark_kmers.py

15.2 ms

benchmark_similar_kmers

benchmarks/sequence/align/benchmark_kmer.py

318.4 µs

benchmark_match_table[KmerTable-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

15 ms

benchmark_indexing_from_kmer_selection[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

test_pickle_and_unpickle[BucketKmerTable(10000)-None]

benchmarks/sequence/align/benchmark_kmers.py

7.4 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

benchmark_structural_alphabet_methods[to_protein_blocks]

benchmarks/structure/benchmark_alphabet.py

6.9 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.2 ms

benchmark_score_threshold_rule[None]

benchmarks/sequence/align/benchmark_kmers.py

2 s

test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

7.4 ms

test_pickle_and_unpickle[KmerTable-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

38.8 ms

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_align_multiple

benchmarks/sequence/align/benchmark_multiple.py

20.2 s

benchmark_align_pairwise[align_banded]

benchmarks/sequence/align/benchmark_pairwise.py

28.7 ms

benchmark_bond_list_creation

benchmarks/structure/benchmark_bonds.py

821.7 µs

benchmark_concatenate

benchmarks/structure/benchmark_bonds.py

316.8 µs

benchmark_align_pairwise[align_optimal]

benchmarks/sequence/align/benchmark_pairwise.py

381.5 ms

benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.1 ms

test_pickle_and_unpickle[KmerTable-None]

benchmarks/sequence/align/benchmark_kmers.py

39 ms

benchmark_align_pairwise[align_local_gapped]

benchmarks/sequence/align/benchmark_pairwise.py

76.9 ms

benchmark_indexing_from_kmers[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.2 ms

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