GitHub Actions run on branch padix-key:issue-892 - biotite-dev/biotite

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CPU Simulation

15 days ago ae73d1a padix-key:issue-892 pull_request

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Parse `atom_id` in `from_topology()`

#893

padix-key:issue-892

15 days ago

CPU Simulation

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Suggested base runs: •

98 total

benchmark_create_kmers

benchmarks/sequence/align/benchmark_kmer.py

232.5 µs

benchmark_get_sequences[fasta_path0-NucleotideSequence]

benchmarks/sequence/benchmark_fasta.py

184 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_encode

benchmarks/sequence/benchmark_alphabet.py

182.7 µs

benchmark_clustering[neighbor_joining]

benchmarks/sequence/benchmark_phylo.py

621.5 µs

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.2 ms

benchmark_get_sequences[fasta_path1-ProteinSequence]

benchmarks/sequence/benchmark_fasta.py

8.8 ms

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_indexing_from_kmer_selection[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_get_a3m_alignments

benchmarks/sequence/benchmark_fasta.py

578.4 ms

benchmark_similar_kmers

benchmarks/sequence/align/benchmark_kmer.py

318.7 µs

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.2 ms

benchmark_clustering[upgma]

benchmarks/sequence/benchmark_phylo.py

488.7 µs

benchmark_structural_alphabet_methods[to_3di]

benchmarks/structure/benchmark_alphabet.py

9.9 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

benchmark_structural_alphabet_methods[to_protein_blocks]

benchmarks/structure/benchmark_alphabet.py

6.9 ms

benchmark_indexing_from_kmers[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.2 ms

benchmark_bond_list_creation

benchmarks/structure/benchmark_bonds.py

817.6 µs

benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.1 ms

benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

14.5 ms

benchmark_concatenate

benchmarks/structure/benchmark_bonds.py

316.5 µs

benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

17.6 ms

benchmark_kmer_decomposition[11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

185.2 µs

benchmark_indexing_from_sequences[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.6 ms

benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.5 ms

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