GitHub Actions run on branch padix-key:fix-missing-intra-bonds - biotite-dev/biotite

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21 hours ago 7b2f910 padix-key:fix-missing-intra-bonds pull_request

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Fix missing intra-residue bonds in PDBx files

#891

padix-key:fix-missing-intra-bonds

21 hours ago

CPU Simulation

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98 total

benchmark_match_table[KmerTable-None]

benchmarks/sequence/align/benchmark_kmers.py

15.2 ms

benchmark_clustering[upgma]

benchmarks/sequence/benchmark_phylo.py

487.8 µs

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.2 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.2 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

benchmark_encode

benchmarks/sequence/benchmark_alphabet.py

183.2 µs

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_create_kmers

benchmarks/sequence/align/benchmark_kmer.py

232.6 µs

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_match_table[KmerTable-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

15.2 ms

benchmark_get_sequences[fasta_path0-NucleotideSequence]

benchmarks/sequence/benchmark_fasta.py

184.8 ms

benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.1 ms

benchmark_score_threshold_rule[11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

2 s

benchmark_indexing_from_kmer_selection[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_similar_kmers

benchmarks/sequence/align/benchmark_kmer.py

318.1 µs

benchmark_kmer_decomposition[None]

benchmarks/sequence/align/benchmark_kmers.py

135.1 µs

test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

7.4 ms

benchmark_indexing_from_kmers[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.2 ms

benchmark_score_threshold_rule[None]

benchmarks/sequence/align/benchmark_kmers.py

2 s

benchmark_structural_alphabet_methods[to_protein_blocks]

benchmarks/structure/benchmark_alphabet.py

6.9 ms

benchmark_clustering[neighbor_joining]

benchmarks/sequence/benchmark_phylo.py

622.8 µs

benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

14.5 ms

benchmark_get_sequences[fasta_path1-ProteinSequence]

benchmarks/sequence/benchmark_fasta.py

8.8 ms

benchmark_concatenate

benchmarks/structure/benchmark_bonds.py

316.9 µs

test_pickle_and_unpickle[BucketKmerTable(10000)-None]

benchmarks/sequence/align/benchmark_kmers.py

7.4 ms

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