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4 days ago b9b99ed padix-key:fix-missing-intra-bonds pull_request

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Fix missing intra-residue bonds in PDBx files
#891
padix-key:fix-missing-intra-bonds
4 days ago
CPU Simulation
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Suggested base runs: •
98 total
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
12.3 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
9.2 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
9.1 ms
benchmark_create_kmers
benchmarks/sequence/align/benchmark_kmer.py
235.3 µs
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
13.3 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
12.3 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py
184.2 ms
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
10.2 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
10.1 ms
benchmark_concatenate
benchmarks/structure/benchmark_bonds.py
317.2 µs
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py
39 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
13.2 ms
benchmark_decode
benchmarks/sequence/benchmark_alphabet.py
3.4 ms
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py
2 s
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
9.5 ms
benchmark_similar_kmers
benchmarks/sequence/align/benchmark_kmer.py
320.9 µs
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
14.5 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
7.4 ms
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py
494.3 µs
benchmark_align_multiple
benchmarks/sequence/align/benchmark_multiple.py
20.2 s
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
17.6 ms
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
38.9 ms
benchmark_connect[connect_via_distances]
benchmarks/structure/benchmark_bonds.py
26.1 ms
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
541.2 µs
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py
138.2 µs
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