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5 days ago ce4452f kwohlfahrt:fix-docstring pull_request

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Fix docstring for `remove_kekulization`

#879

kwohlfahrt:fix-docstring

5 days ago

CPU Simulation

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Suggested base runs: •

98 total

benchmark_create_kmers

benchmarks/sequence/align/benchmark_kmer.py

232.9 µs

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.2 ms

benchmark_match_table[KmerTable-None]

benchmarks/sequence/align/benchmark_kmers.py

15.2 ms

benchmark_get_sequences[fasta_path0-NucleotideSequence]

benchmarks/sequence/benchmark_fasta.py

184.8 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_get_sequences[fasta_path1-ProteinSequence]

benchmarks/sequence/benchmark_fasta.py

8.8 ms

benchmark_bond_list_creation

benchmarks/structure/benchmark_bonds.py

813.3 µs

benchmark_get_a3m_alignments

benchmarks/sequence/benchmark_fasta.py

576.4 ms

benchmark_encode

benchmarks/sequence/benchmark_alphabet.py

183.3 µs

benchmark_structural_alphabet_methods[to_protein_blocks]

benchmarks/structure/benchmark_alphabet.py

6.9 ms

benchmark_match_table[KmerTable-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

15.2 ms

benchmark_clustering[neighbor_joining]

benchmarks/sequence/benchmark_phylo.py

624.6 µs

benchmark_similar_kmers

benchmarks/sequence/align/benchmark_kmer.py

317.7 µs

benchmark_structural_alphabet_methods[to_3di]

benchmarks/structure/benchmark_alphabet.py

10 ms

test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

7.4 ms

benchmark_score_threshold_rule[11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

2 s

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.2 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.2 ms

benchmark_connect[connect_via_distances]

benchmarks/structure/benchmark_bonds.py

26.1 ms

benchmark_concatenate

benchmarks/structure/benchmark_bonds.py

317.1 µs

test_pickle_and_unpickle[BucketKmerTable(10000)-None]

benchmarks/sequence/align/benchmark_kmers.py

7.4 ms

benchmark_indexing_from_kmer_selection[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

test_pickle_and_unpickle[KmerTable-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

38.9 ms

benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

17.6 ms

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