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20 days ago 9309023 LiudengZhang:fix/mmcif-optional-ins-code pull_requestCompare
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CompareHandle missing pdbx_PDB_ins_code in mmCIF parser
#877
LiudengZhang:fix/mmcif-optional-ins-code
20 days ago
CPU Simulation
63 total
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py323.3 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py7.4 ms
benchmark_score_threshold_rule[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py2 s
benchmark_lddt[True-all]
benchmarks/structure/benchmark_compare.py884.9 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.1 ms
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.2 ms
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py2 s
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py7.4 ms
benchmark_get_a3m_alignments
benchmarks/sequence/benchmark_fasta.py576.1 ms
benchmark_lddt[True-atom]
benchmarks/structure/benchmark_compare.py1.9 s
benchmark_get_assembly
benchmarks/structure/benchmark_pdbx.py663.2 ms
benchmark_lddt[True-chain]
benchmarks/structure/benchmark_compare.py1.9 s
benchmark_lddt[True-residue]
benchmarks/structure/benchmark_compare.py1.9 s
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.3 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py184.7 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py110.5 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py39 ms
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py14.5 ms
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py10.2 ms
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py38.8 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.2 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py699.8 ms
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py17.6 ms