GitHub Actions run on branch padix-key:rust-alphabet - biotite-dev/biotite

GitHub Actions run

CPU Simulation

22 days ago c0e31af padix-key:rust-alphabet pull_request

Compare

Base

Search a run

Head

Port alphabet codec to Rust

#876

padix-key:rust-alphabet

22 days ago

CPU Simulation

Compare

Suggested base runs: • •

101 total

benchmark_indexing_from_kmer_selection[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_lddt[True-residue]

benchmarks/structure/benchmark_compare.py

1.9 s

benchmark_get_remark

benchmarks/structure/benchmark_pdb.py

171.5 µs

benchmark_structural_alphabet_methods[to_protein_blocks]

benchmarks/structure/benchmark_alphabet.py

6.5 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_get_coord

benchmarks/structure/benchmark_pdb.py

584.9 µs

benchmark_get_structure

benchmarks/structure/benchmark_pdb.py

4 ms

benchmark_structural_alphabet_methods[to_3di]

benchmarks/structure/benchmark_alphabet.py

9.6 ms

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_set_structure

benchmarks/structure/benchmark_pdb.py

11.7 ms

benchmark_connect[connect_via_residue_names]

benchmarks/structure/benchmark_bonds.py

4.3 ms

benchmark_connect[connect_via_distances]

benchmarks/structure/benchmark_bonds.py

2.6 ms

benchmark_get_structure_with_bonds

benchmarks/structure/benchmark_pdb.py

9.2 ms

benchmark_bond_list_creation

benchmarks/structure/benchmark_bonds.py

269 µs

benchmark_read

benchmarks/structure/benchmark_pdb.py

2.1 ms

benchmark_get_assembly

benchmarks/structure/benchmark_pdbx.py

662.1 ms

benchmark_deserialize_pdbx[cif]

benchmarks/structure/benchmark_pdbx.py

105.8 ms

benchmark_compress

benchmarks/structure/benchmark_pdbx.py

708.8 ms

benchmark_conversion[as_graph]

benchmarks/structure/benchmark_bonds.py

12 ms

benchmark_concatenate

benchmarks/structure/benchmark_bonds.py

206.8 µs

benchmark_set_structure_with_bonds

benchmarks/structure/benchmark_pdb.py

11.8 ms

benchmark_conversion[as_set]

benchmarks/structure/benchmark_bonds.py

872.6 µs

benchmark_conversion[as_array]

benchmarks/structure/benchmark_bonds.py

108.2 µs

benchmark_deserialize_pdbx[bcif]

benchmarks/structure/benchmark_pdbx.py

100 ms

Home Terms Privacy Docs