GitHub Actions run
CPU Simulation
22 days ago 9c2c6b2 main pushCompare
Suggested base runs:
98 total
benchmark_conversion[as_graph]
benchmarks/structure/benchmark_bonds.py8.7 ms
benchmark_create_kmers
benchmarks/sequence/align/benchmark_kmer.py233.6 µs
benchmark_read
benchmarks/structure/benchmark_pdb.py3.5 ms
benchmark_conversion[adjacency_matrix]
benchmarks/structure/benchmark_bonds.py1.4 ms
benchmark_conversion[as_array]
benchmarks/structure/benchmark_bonds.py116.1 µs
benchmark_set_structure
benchmarks/structure/benchmark_pdb.py34.2 ms
benchmark_conversion[get_all_bonds]
benchmarks/structure/benchmark_bonds.py180.2 µs
benchmark_set_structure_with_bonds
benchmarks/structure/benchmark_pdb.py34.2 ms
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.1 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.2 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_similar_kmers
benchmarks/sequence/align/benchmark_kmer.py317.8 µs
benchmark_find_connected
benchmarks/structure/benchmark_bonds.py303.2 µs
benchmark_conversion[as_set]
benchmarks/structure/benchmark_bonds.py859.1 µs
benchmark_conversion[bond_type_matrix]
benchmarks/structure/benchmark_bonds.py1.4 ms
benchmark_get_assembly
benchmarks/structure/benchmark_pdbx.py663.5 ms
benchmark_find_rotatable_bonds
benchmarks/structure/benchmark_bonds.py43.9 ms
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py10.2 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py698.9 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.3 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py81.6 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py110.6 ms
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py18.4 ms
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py111.8 ms