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13 hours ago f26d0b5 padix-key:rust-bondlist pull_requestCompare
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CompareImplement `BondList` and connection functionalities in Rust
#871
padix-key:rust-bondlist
13 hours ago
CPU Simulation
90 total
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py10.1 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_set_structure_with_bonds
benchmarks/structure/benchmark_pdb.py11.7 ms
benchmark_set_structure
benchmarks/structure/benchmark_pdb.py11.6 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.1 ms
benchmark_find_connected
benchmarks/structure/benchmark_bonds.py467.5 µs
benchmark_find_rotatable_bonds
benchmarks/structure/benchmark_bonds.py96.3 ms
benchmark_conversion[get_all_bonds]
benchmarks/structure/benchmark_bonds.py149.7 µs
benchmark_get_assembly
benchmarks/structure/benchmark_pdbx.py662.9 ms
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py17.3 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.1 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.2 ms
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py14.2 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py697.7 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.3 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py110.4 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py34.7 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py10.1 ms
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py146.8 µs
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py111.8 ms
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py18.3 ms
benchmark_get_bonds
benchmarks/structure/benchmark_bonds.py7.4 ms
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.4 ms
benchmark_get_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py58.7 ms