GitHub Actions run on branch padix-key:rust-sasa - biotite-dev/biotite

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CPU Simulation

17 days ago 055ad4f padix-key:rust-sasa pull_request

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Implement `sasa()` in Rust

#867

padix-key:rust-sasa

17 days ago

CPU Simulation

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Suggested base runs: •

90 total

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_indexing_from_kmer_selection[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

test_pickle_and_unpickle[BucketKmerTable(10000)-None]

benchmarks/sequence/align/benchmark_kmers.py

7.4 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.1 ms

benchmark_indexing_from_kmers[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.2 ms

benchmark_find_rotatable_bonds

benchmarks/structure/benchmark_bonds.py

44 ms

benchmark_get_sequences[fasta_path0-NucleotideSequence]

benchmarks/sequence/benchmark_fasta.py

181.9 ms

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_conversion[as_graph]

benchmarks/structure/benchmark_bonds.py

8.8 ms

benchmark_conversion[as_array]

benchmarks/structure/benchmark_bonds.py

116.1 µs

benchmark_find_connected

benchmarks/structure/benchmark_bonds.py

297.8 µs

benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

14.2 ms

benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.1 ms

benchmark_get_sequences[fasta_path1-ProteinSequence]

benchmarks/sequence/benchmark_fasta.py

8.8 ms

benchmark_score_threshold_rule[11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

1.9 s

test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

7.3 ms

benchmark_cell_list_creation

benchmarks/structure/benchmark_celllist.py

339.1 µs

benchmark_cell_list_compute_contacts[MASK]

benchmarks/structure/benchmark_celllist.py

22.1 ms

benchmark_conversion[as_set]

benchmarks/structure/benchmark_bonds.py

886.7 µs

benchmark_conversion[get_all_bonds]

benchmarks/structure/benchmark_bonds.py

179.1 µs

benchmark_conversion[bond_type_matrix]

benchmarks/structure/benchmark_bonds.py

1.4 ms

benchmark_score_threshold_rule[None]

benchmarks/sequence/align/benchmark_kmers.py

1.9 s

benchmark_get_a3m_alignments

benchmarks/sequence/benchmark_fasta.py

575.5 ms

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