GitHub Actions run on branch padix-key:rust-celllist - biotite-dev/biotite

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CPU Simulation

19 days ago a99d0eb padix-key:rust-celllist pull_request

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Implement `CellList` in Rust

#864

padix-key:rust-celllist

19 days ago

CPU Simulation

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Suggested base runs: • •

90 total

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.4 ms

benchmark_find_rotatable_bonds

benchmarks/structure/benchmark_bonds.py

44.1 ms

benchmark_set_structure_with_bonds

benchmarks/structure/benchmark_pdb.py

11.6 ms

benchmark_find_connected

benchmarks/structure/benchmark_bonds.py

297.2 µs

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.2 ms

benchmark_compress

benchmarks/structure/benchmark_pdbx.py

695.9 ms

benchmark_conversion[get_all_bonds]

benchmarks/structure/benchmark_bonds.py

178.2 µs

benchmark_deserialize_pdbx[bcif]

benchmarks/structure/benchmark_pdbx.py

109.8 ms

benchmark_set_structure

benchmarks/structure/benchmark_pdb.py

11.7 ms

benchmark_get_assembly

benchmarks/structure/benchmark_pdbx.py

662.6 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.2 ms

benchmark_get_structure[bcif-False]

benchmarks/structure/benchmark_pdbx.py

18.3 ms

benchmark_set_structure[bcif-False]

benchmarks/structure/benchmark_pdbx.py

8.1 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

benchmark_get_structure[bcif-True]

benchmarks/structure/benchmark_pdbx.py

80.9 ms

benchmark_get_bonds

benchmarks/structure/benchmark_bonds.py

15.1 ms

benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

17.3 ms

benchmark_get_structure[cif-False]

benchmarks/structure/benchmark_pdbx.py

58.7 ms

benchmark_sasa

benchmarks/structure/benchmark_sasa.py

289.1 ms

benchmark_serialize_pdbx[cif]

benchmarks/structure/benchmark_pdbx.py

200.7 ms

benchmark_get_all_bonds

benchmarks/structure/benchmark_bonds.py

179.5 µs

benchmark_deserialize_pdbx[cif]

benchmarks/structure/benchmark_pdbx.py

105.3 ms

benchmark_indexing_from_kmers[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.2 ms

benchmark_cell_list_compute_contacts[MAPPING]

benchmarks/structure/benchmark_celllist.py

18.7 ms

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