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20 hours ago 37a7912 padix-key:issue-855 pull_requestCompare
Suggested base runs: •
63 total
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py185.1 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.1 ms
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py7 ms
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py10.2 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py10 ms
benchmark_lddt[False-all]
benchmarks/structure/benchmark_compare.py227.2 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.1 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.3 ms
benchmark_get_sequences[fasta_path1-ProteinSequence]
benchmarks/sequence/benchmark_fasta.py8.8 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py10.1 ms
benchmark_lddt[True-chain]
benchmarks/structure/benchmark_compare.py1.9 s
benchmark_lddt[True-residue]
benchmarks/structure/benchmark_compare.py1.9 s
benchmark_lddt[True-atom]
benchmarks/structure/benchmark_compare.py1.9 s
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py323.2 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py311.2 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py317.9 ms
benchmark_superimpose[superimpose]
benchmarks/structure/benchmark_superimpose.py2.4 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py106 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.2 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py81.4 ms
benchmark_superimpose[superimpose_homologs]
benchmarks/structure/benchmark_superimpose.py28.3 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py128.1 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py110.3 ms