GitHub Actions run on branch padix-key:rust - biotite-dev/biotite

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CPU Simulation

2 days ago dcb748d padix-key:rust pull_request

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Introduce Rust code into Biotite

#814

padix-key:rust

2 days ago

CPU Simulation

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Suggested base runs:

70 total

benchmark_lddt[False-atom]

benchmarks/structure/benchmark_compare.py

309.2 ms

benchmark_lddt[False-chain]

benchmarks/structure/benchmark_compare.py

315.8 ms

benchmark_indexing_from_kmer_selection[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.1 ms

benchmark_get_assembly

benchmarks/structure/benchmark_pdbx.py

664.2 ms

benchmark_lddt[False-all]

benchmarks/structure/benchmark_compare.py

226.6 ms

benchmark_get_structure[cif-False]

benchmarks/structure/benchmark_pdbx.py

58.6 ms

benchmark_deserialize_pdbx[cif]

benchmarks/structure/benchmark_pdbx.py

105.2 ms

benchmark_indexing_from_kmers[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.2 ms

benchmark_get_structure[bcif-True]

benchmarks/structure/benchmark_pdbx.py

81 ms

benchmark_structural_alphabet_methods[to_protein_blocks]

benchmarks/structure/benchmark_alphabet.py

6.9 ms

benchmark_lddt[True-atom]

benchmarks/structure/benchmark_compare.py

1.9 s

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_indexing_from_sequences[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.5 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

benchmark_lddt[True-all]

benchmarks/structure/benchmark_compare.py

884.5 ms

benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.4 ms

benchmark_kmer_decomposition[11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

181.2 µs

benchmark_lddt[True-residue]

benchmarks/structure/benchmark_compare.py

1.9 s

benchmark_serialize_pdbx[cif]

benchmarks/structure/benchmark_pdbx.py

201.1 ms

benchmark_match[KmerTable-None]

benchmarks/sequence/align/benchmark_kmers.py

490.2 µs

benchmark_serialize_pdbx[bcif]

benchmarks/structure/benchmark_pdbx.py

111.6 ms

benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.1 ms

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