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CPU Simulation
2 days ago c13f31f padix-key:issue-856 pull_requestCompare
Suggested base runs: •
63 total
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.2 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py10.1 ms
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py12.3 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py81.3 ms
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py29.9 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.1 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py9.9 ms
benchmark_lddt[False-all]
benchmarks/structure/benchmark_compare.py227.3 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py202 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.3 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py124.3 ms
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py18.4 ms
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py10.2 ms
benchmark_get_sequences[fasta_path1-ProteinSequence]
benchmarks/sequence/benchmark_fasta.py8.8 ms
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py32.3 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py311.2 ms
benchmark_lddt[True-all]
benchmarks/structure/benchmark_compare.py884.9 ms
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py7 ms
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py112 ms
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py9.5 ms
benchmark_superimpose[superimpose_without_outliers]
benchmarks/structure/benchmark_superimpose.py17.4 ms
benchmark_get_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py58.7 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py13.2 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py317.9 ms