GitHub Actions run on branch padix-key:docs-hotfix - biotite-dev/biotite

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8 days ago b31c2a1 padix-key:docs-hotfix pull_request

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Hotfix: failing gallery examples

#854

padix-key:docs-hotfix

8 days ago

CPU Simulation

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63 total

benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.2 ms

benchmark_get_sequences[fasta_path0-NucleotideSequence]

benchmarks/sequence/benchmark_fasta.py

184.2 ms

benchmark_get_structure[bcif-True]

benchmarks/structure/benchmark_pdbx.py

81.3 ms

benchmark_get_sequences[fasta_path1-ProteinSequence]

benchmarks/sequence/benchmark_fasta.py

8.8 ms

benchmark_get_structure[cif-False]

benchmarks/structure/benchmark_pdbx.py

58.7 ms

benchmark_serialize_pdbx[bcif]

benchmarks/structure/benchmark_pdbx.py

111.8 ms

benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.2 ms

benchmark_indexing_from_kmer_selection[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

12.3 ms

benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

9.1 ms

benchmark_get_structure[bcif-False]

benchmarks/structure/benchmark_pdbx.py

18.4 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

13.3 ms

benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

10.1 ms

benchmark_set_structure[bcif-False]

benchmarks/structure/benchmark_pdbx.py

8.1 ms

benchmark_get_a3m_alignments

benchmarks/sequence/benchmark_fasta.py

576.2 ms

benchmark_get_structure[cif-True]

benchmarks/structure/benchmark_pdbx.py

124.3 ms

benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

17.6 ms

benchmark_structural_alphabet_methods[to_3di]

benchmarks/structure/benchmark_alphabet.py

10 ms

benchmark_serialize_pdbx[cif]

benchmarks/structure/benchmark_pdbx.py

200.7 ms

benchmark_kmer_decomposition[11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

185.9 µs

benchmark_superimpose[superimpose_homologs]

benchmarks/structure/benchmark_superimpose.py

28.4 ms

benchmark_lddt[False-chain]

benchmarks/structure/benchmark_compare.py

317.9 ms

benchmark_structural_alphabet_methods[to_protein_blocks]

benchmarks/structure/benchmark_alphabet.py

7 ms

benchmark_match[BucketKmerTable(10000)-None]

benchmarks/sequence/align/benchmark_kmers.py

574 µs

benchmark_set_structure[bcif-True]

benchmarks/structure/benchmark_pdbx.py

30 ms

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