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CPU Simulation
Uses the
CPU Simulation instrument
to collect CPU performance metrics.
8 days ago
c834539
padix-key:persistent-connection
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Use persistent HTTP connection
#842
padix-key:persistent-connection
8 days ago
CPU Simulation
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Benchmarks
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py
6.4 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
9.4 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py
39.1 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
9.4 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
12.5 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py
10.4 ms
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
12.5 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py
311.7 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py
318.3 ms
benchmark_lddt[True-chain]
benchmarks/structure/benchmark_compare.py
1.9 s
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
14.5 ms
benchmark_set_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py
8.1 ms
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py
30.4 ms
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py
112 ms
benchmark_lddt[False-all]
benchmarks/structure/benchmark_compare.py
228.6 ms
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py
323.6 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
10.4 ms
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
9.5 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py
702.4 ms
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py
106.3 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
183.7 µs
benchmark_lddt[True-residue]
benchmarks/structure/benchmark_compare.py
1.9 s
benchmark_superimpose[superimpose_without_outliers]
benchmarks/structure/benchmark_superimpose.py
17.4 ms
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py
32.7 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
13.5 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py
204.4 ms
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py
10.4 ms
benchmark_indexing_from_sequences[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
12.6 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
13.5 ms
benchmark_lddt[True-all]
benchmarks/structure/benchmark_compare.py
882.2 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py
130.6 ms
benchmark_get_assembly
benchmarks/structure/benchmark_pdbx.py
900.2 ms
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py
146.8 µs
benchmark_superimpose[superimpose_homologs]
benchmarks/structure/benchmark_superimpose.py
24.5 ms
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py
573.1 µs
benchmark_lddt[True-atom]
benchmarks/structure/benchmark_compare.py
1.9 s
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py
82.8 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py
108.2 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py
110.6 ms
benchmark_superimpose[superimpose]
benchmarks/structure/benchmark_superimpose.py
2.5 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py
13 ms
benchmark_get_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py
60.3 ms
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py
17.6 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
543.4 µs
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
539.6 µs
benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
460.8 µs
benchmark_match_kmer_selection[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py
544 µs
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py
491.1 µs
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
623.9 µs
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
15 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py
127.9 ms
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py
18.4 ms
benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
12.9 ms
benchmark_match_kmer_selection[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py
461.5 µs
benchmark_match_table[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py
15.2 ms
benchmark_score_threshold_rule[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
2 s
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py
2 s
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
7.4 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py
7.4 ms
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py
38.9 ms
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