Comparing
padix-key:compress
(1edfc0c
) withmain
(53256ed
)-11%
- Regression
- 1
- Untouched
- 44
Benchmarks
45 total
benchmark_compress
benchmarks/structure/benchmark_pdbx.py-11%
506 ms565.6 ms
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+1%
14.4 ms14.3 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py+1%
113.6 ms113 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py+1%
12.9 ms12.9 ms
benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
12.8 ms12.8 ms
benchmark_match_table[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
15.1 ms15 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
181.7 ms181.2 ms
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
107.5 ms107.3 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
147 ms146.8 ms
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
625.7 µs624.8 µs
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py0%
154.5 µs154.3 µs
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
129.3 ms129.1 ms
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.8 ms9.7 ms
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
21.5 ms21.5 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.9 ms9.9 ms
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
37.7 ms37.6 ms
benchmark_indexing_from_sequences[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.8 ms12.8 ms
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
14.2 ms14.2 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.4 ms
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
536.5 µs536.3 µs
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
7.3 ms7.3 ms
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
86.1 ms86.1 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
10.7 ms10.7 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
123.7 ms123.7 ms
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
492.8 µs492.8 µs
Commits
Click on a commit to change the comparison rangeBase
main
53256ed
-10.55%
Make argument name compatible with latest 'viennarna' version
1edfc0c
1 year ago
by padix-key