Port PDBx encodings to Rust
#873Comparing
padix-key:rust-pdbx-encoding
(c92c658
) withrust
(8f348b6
)×2.5
- Improvement
- 4
- Untouched
- 59
- New
- 27
No successful run was found on rust ( afa3caa) during the generation of this report, so main ( 8f348b6) was used instead as the comparison base. There might be some changes unrelated to this pull request in this report.
Benchmarks
90 total
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py×2.5
81.5 ms33.2 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py+60%
124.5 ms77.8 ms
benchmark_lddt[False-all]
benchmarks/structure/benchmark_compare.py+12%
227.1 ms202.2 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py+11%
110.8 ms99.7 ms
benchmark_get_coord
benchmarks/structure/benchmark_pdb.pyN/A
N/A584 µs
benchmark_read
benchmarks/structure/benchmark_pdb.pyN/A
N/A2.1 ms
benchmark_set_structure_with_bonds
benchmarks/structure/benchmark_pdb.pyN/A
N/A11.8 ms
benchmark_get_structure
benchmarks/structure/benchmark_pdb.pyN/A
N/A4 ms
benchmark_get_remark
benchmarks/structure/benchmark_pdb.pyN/A
N/A170.4 µs
benchmark_set_structure
benchmarks/structure/benchmark_pdb.pyN/A
N/A11.6 ms
benchmark_get_structure_with_bonds
benchmarks/structure/benchmark_pdb.pyN/A
N/A9.2 ms
benchmark_conversion[bond_type_matrix]
benchmarks/structure/benchmark_bonds.pyN/A
N/A1.3 ms
benchmark_conversion[get_all_bonds]
benchmarks/structure/benchmark_bonds.pyN/A
N/A149.6 µs
benchmark_sasa
benchmarks/structure/benchmark_sasa.pyN/A
N/A234.7 ms
benchmark_conversion[adjacency_matrix]
benchmarks/structure/benchmark_bonds.pyN/A
N/A1.3 ms
benchmark_find_rotatable_bonds
benchmarks/structure/benchmark_bonds.pyN/A
N/A96.3 ms
benchmark_concatenate
benchmarks/structure/benchmark_bonds.pyN/A
N/A206.4 µs
benchmark_connect[connect_via_residue_names]
benchmarks/structure/benchmark_bonds.pyN/A
N/A4.3 ms
benchmark_bond_list_creation
benchmarks/structure/benchmark_bonds.pyN/A
N/A270.7 µs
benchmark_connect[connect_via_distances]
benchmarks/structure/benchmark_bonds.pyN/A
N/A2.6 ms
benchmark_get_bonds
benchmarks/structure/benchmark_bonds.pyN/A
N/A7.4 ms
benchmark_cell_list_creation
benchmarks/structure/benchmark_celllist.pyN/A
N/A340.6 µs
benchmark_conversion[as_array]
benchmarks/structure/benchmark_bonds.pyN/A
N/A108.5 µs
benchmark_find_connected
benchmarks/structure/benchmark_bonds.pyN/A
N/A465.2 µs
benchmark_conversion[as_graph]
benchmarks/structure/benchmark_bonds.pyN/A
N/A12 ms
Commits
Click on a commit to change the comparison rangeBase
main
8f348b6
×2.5
Port PDBx encodings to Rust
c92c658
5 hours ago
by padix-key