Port PDBx encodings to Rust
#873Comparing
padix-key:rust-pdbx-encoding
(c92c658
) withrust
(8f348b6
)×2.5
- Improvement
- 4
- Untouched
- 59
- New
- 27
No successful run was found on rust ( afa3caa) during the generation of this report, so main ( 8f348b6) was used instead as the comparison base. There might be some changes unrelated to this pull request in this report.
Benchmarks
90 total
benchmark_cell_list_compute_contacts[MAPPING]
benchmarks/structure/benchmark_celllist.pyN/A
N/A16.4 ms
benchmark_cell_list_compute_contacts[PAIRS]
benchmarks/structure/benchmark_celllist.pyN/A
N/A16.4 ms
benchmark_conversion[as_set]
benchmarks/structure/benchmark_bonds.pyN/A
N/A908.1 µs
benchmark_partial_charges
benchmarks/structure/benchmark_charges.pyN/A
N/A709.6 µs
benchmark_cell_list_compute_contacts[MASK]
benchmarks/structure/benchmark_celllist.pyN/A
N/A17.6 ms
benchmark_get_all_bonds
benchmarks/structure/benchmark_bonds.pyN/A
N/A151 µs
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py+8%
311.1 ms286.9 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py+8%
317.8 ms293.5 ms
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py+8%
323.1 ms298.8 ms
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py+5%
7 ms6.6 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py+4%
10 ms9.6 ms
benchmark_score_threshold_rule[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+3%
2 s1.9 s
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py+3%
18.4 ms17.9 ms
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py+3%
2 s1.9 s
benchmark_lddt[True-all]
benchmarks/structure/benchmark_compare.py+3%
884.9 ms860.8 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+2%
185.6 µs181.1 µs
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py+2%
14.5 ms14.2 ms
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py+2%
17.6 ms17.3 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py+2%
184.4 ms181.6 ms
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py+1%
150.6 µs148.4 µs
benchmark_lddt[True-chain]
benchmarks/structure/benchmark_compare.py+1%
1.9 s1.9 s
benchmark_lddt[True-residue]
benchmarks/structure/benchmark_compare.py+1%
1.9 s1.9 s
benchmark_lddt[True-atom]
benchmarks/structure/benchmark_compare.py+1%
1.9 s1.9 s
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py+1%
32.3 ms31.9 ms
benchmark_indexing_from_sequences[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py+1%
12.6 ms12.5 ms
Commits
Click on a commit to change the comparison rangeBase
main
8f348b6
×2.5
Port PDBx encodings to Rust
c92c658
5 hours ago
by padix-key