Add measurements of nucleotide dihedral angles
#886Comparing
padix-key:nucleotide-dihedrals
(0189bfe
) withmain
(2e5ef85
)0%
- Untouched
- 98
Benchmarks
98 total
benchmark_get_all_bonds
benchmarks/structure/benchmark_bonds.py+3%
184.8 µs180.3 µs
benchmark_find_connected
benchmarks/structure/benchmark_bonds.py+1%
307.3 µs303.6 µs
benchmark_conversion[get_all_bonds]
benchmarks/structure/benchmark_bonds.py+1%
181.1 µs179.2 µs
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py+1%
7 ms6.9 ms
benchmark_concatenate
benchmarks/structure/benchmark_bonds.py+1%
320.1 µs317.1 µs
benchmark_conversion[as_array]
benchmarks/structure/benchmark_bonds.py+1%
116.1 µs115.2 µs
benchmark_partial_charges
benchmarks/structure/benchmark_charges.py+1%
732.9 µs728.5 µs
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py+1%
200.2 ms199.1 ms
benchmark_conversion[as_set]
benchmarks/structure/benchmark_bonds.py+1%
862 µs857.2 µs
benchmark_superimpose[superimpose_without_outliers]
benchmarks/structure/benchmark_superimpose.py0%
17.4 ms17.4 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
105.7 ms105.4 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
39.1 ms39 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py0%
10 ms9.9 ms
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
104 ms103.7 ms
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
576.1 µs574.8 µs
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
128.2 ms127.9 ms
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
39 ms38.9 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py0%
312.2 ms311.6 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py0%
318.3 ms317.8 ms
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py0%
323.6 ms323.1 ms
benchmark_set_structure_with_bonds
benchmarks/structure/benchmark_pdb.py0%
34.2 ms34.2 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
186 µs185.7 µs
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
30.4 ms30.4 ms
benchmark_clustering[upgma]
benchmarks/sequence/benchmark_phylo.py0%
489.1 µs488.6 µs
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
623.8 µs623.2 µs
Commits
Click on a commit to change the comparison rangeBase
main
2e5ef85
+0.05%
Add `nucleotide_dihedral_backbone` and `nucleotide_dihedral_side_chain`
0189bfe
3 days ago
by padix-key