padix-key:more-benchmark - Branch - biotite-dev/biotite

Add more benchmarks for modules to be replaced by Rust code

#863Merged

Comparing

padix-key:more-benchmark

(

c08a5f1

) with

rust

(

5fde24b

)

Untouched: 63

New: 25

No successful run was found on rust ( 1a857c2) during the generation of this report, so main ( 5fde24b) was used instead as the comparison base. There might be some changes unrelated to this pull request in this report.

Benchmarks

88 total

benchmark_conversion[get_all_bonds]

benchmarks/structure/benchmark_bonds.py

N/A

N/A178.4 µs

benchmark_set_structure_with_bonds

benchmarks/structure/benchmark_pdb.py

N/A

N/A11.8 ms

benchmark_set_structure

benchmarks/structure/benchmark_pdb.py

N/A

N/A11.5 ms

benchmark_conversion[bond_type_matrix]

benchmarks/structure/benchmark_bonds.py

N/A

N/A1.4 ms

benchmark_find_connected

benchmarks/structure/benchmark_bonds.py

N/A

N/A297.5 µs

benchmark_get_all_bonds

benchmarks/structure/benchmark_bonds.py

N/A

N/A179.5 µs

benchmark_find_rotatable_bonds

benchmarks/structure/benchmark_bonds.py

N/A

N/A44 ms

benchmark_cell_list_creation

benchmarks/structure/benchmark_celllist.py

N/A

N/A937.6 µs

benchmark_sasa

benchmarks/structure/benchmark_sasa.py

N/A

N/A249.8 ms

benchmark_partial_charges

benchmarks/structure/benchmark_charges.py

N/A

N/A729.2 µs

benchmark_get_bonds

benchmarks/structure/benchmark_bonds.py

N/A

N/A15.2 ms

benchmark_cell_list_compute_contacts

benchmarks/structure/benchmark_celllist.py

N/A

N/A11.5 ms

benchmark_get_coord

benchmarks/structure/benchmark_pdb.py

N/A

N/A585.1 µs

benchmark_get_remark

benchmarks/structure/benchmark_pdb.py

N/A

N/A170.3 µs

benchmark_read

benchmarks/structure/benchmark_pdb.py

N/A

N/A1.9 ms

benchmark_get_structure

benchmarks/structure/benchmark_pdb.py

N/A

N/A4 ms

benchmark_get_structure_with_bonds

benchmarks/structure/benchmark_pdb.py

N/A

N/A55.7 ms

benchmark_conversion[as_set]

benchmarks/structure/benchmark_bonds.py

N/A

N/A840.4 µs

benchmark_conversion[as_array]

benchmarks/structure/benchmark_bonds.py

N/A

N/A115.5 µs

benchmark_connect[connect_via_distances]

benchmarks/structure/benchmark_bonds.py

N/A

N/A26.1 ms

benchmark_conversion[adjacency_matrix]

benchmarks/structure/benchmark_bonds.py

N/A

N/A1.4 ms

benchmark_concatenate

benchmarks/structure/benchmark_bonds.py

N/A

N/A316.3 µs

benchmark_bond_list_creation

benchmarks/structure/benchmark_bonds.py

N/A

N/A806.9 µs

benchmark_connect[connect_via_residue_names]

benchmarks/structure/benchmark_bonds.py

N/A

N/A50.4 ms

benchmark_conversion[as_graph]

benchmarks/structure/benchmark_bonds.py

N/A

N/A8.8 ms

Commits

Click on a commit to change the comparison range

Base

main

5fde24b

+0.37%

Add benchmarks for modules to be replaced by Rust code

c08a5f1

13 days ago

by padix-key

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