Comparing
padix-key:lddt
(fa2cace
) withmain
(ba3e1c1
)0%
- Untouched
- 59
Benchmarks
59 total
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py+1%
151.6 µs149.5 µs
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py+1%
9.7 ms9.6 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py+1%
203.4 ms201.2 ms
benchmark_indexing_from_sequences[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py+1%
12.8 ms12.6 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+1%
187 µs185.2 µs
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py+1%
105 ms104.2 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py+1%
128.9 ms128 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py+1%
13.3 ms13.2 ms
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py+1%
495.9 µs493.1 µs
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py+1%
8.9 ms8.9 ms
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
14.2 ms14.2 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py0%
313.7 ms312.7 ms
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
17.3 ms17.3 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
13 ms13 ms
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
15.2 ms15.2 ms
benchmark_lddt[False-all]
benchmarks/structure/benchmark_compare.py0%
229.2 ms228.8 ms
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py0%
2 s2 s
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
10.3 ms10.3 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.3 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
118.6 ms118.5 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.4 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
38.9 ms38.9 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py0%
676.1 ms675.8 ms
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
576.4 µs576.2 µs
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
38.8 ms38.8 ms
Commits
Click on a commit to change the comparison rangeBase
main
ba3e1c1
+0.08%
Avoid warning in case of no contact in structure
a29e9a5
10 months ago
by padix-key+0.04%
Adapt test to new OpenMM version
fa2cace
10 months ago
by padix-key