Comparing
padix-key:issue-892
(ae73d1a
) withmain
(2315f2a
)0%
- Untouched
- 98
Benchmarks
98 total
benchmark_bond_list_creation
benchmarks/structure/benchmark_bonds.py+1%
822.9 µs817.6 µs
benchmark_superimpose[superimpose]
benchmarks/structure/benchmark_superimpose.py+1%
2.5 ms2.5 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
106 ms105.5 ms
benchmark_partial_charges
benchmarks/structure/benchmark_charges.py0%
727.6 µs724.2 µs
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
30.5 ms30.4 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py0%
184.6 ms184 ms
benchmark_get_sequences[fasta_path1-ProteinSequence]
benchmarks/sequence/benchmark_fasta.py0%
8.8 ms8.8 ms
benchmark_align_pairwise[align_local_gapped]
benchmarks/sequence/align/benchmark_pairwise.py0%
76.9 ms76.7 ms
benchmark_get_all_bonds
benchmarks/structure/benchmark_bonds.py0%
180.9 µs180.4 µs
benchmark_concatenate
benchmarks/structure/benchmark_bonds.py0%
317.3 µs316.5 µs
benchmark_conversion[as_set]
benchmarks/structure/benchmark_bonds.py0%
863.7 µs861.9 µs
benchmark_similar_kmers
benchmarks/sequence/align/benchmark_kmer.py0%
319.3 µs318.7 µs
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
124.7 ms124.5 ms
benchmark_get_structure_with_bonds
benchmarks/structure/benchmark_pdb.py0%
77.5 ms77.4 ms
benchmark_encode
benchmarks/sequence/benchmark_alphabet.py0%
183 µs182.7 µs
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
200 ms199.7 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
128.2 ms128 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
110.5 ms110.4 ms
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py0%
6.9 ms6.9 ms
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
18.4 ms18.4 ms
benchmark_clustering[neighbor_joining]
benchmarks/sequence/benchmark_phylo.py0%
622.2 µs621.5 µs
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py0%
10 ms9.9 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.4 ms
benchmark_get_bonds
benchmarks/structure/benchmark_bonds.py0%
15.3 ms15.2 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.4 ms
Commits
Click on a commit to change the comparison rangeBase
main
2315f2a
+0.02%
Parse `atom_id` in `from_topology()`
ae73d1a
15 days ago
by padix-key