Comparing
padix-key:issue-888
(c5c57af
) withmain
(c236d1a
)0%
- Untouched
- 98
Benchmarks
98 total
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+1%
15.2 ms15 ms
benchmark_get_all_bonds
benchmarks/structure/benchmark_bonds.py+1%
182.3 µs180.7 µs
benchmark_connect[connect_via_residue_names]
benchmarks/structure/benchmark_bonds.py+1%
50.9 ms50.5 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py+1%
81.7 ms81.3 ms
benchmark_find_connected
benchmarks/structure/benchmark_bonds.py0%
305.8 µs304.3 µs
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
625 µs622.3 µs
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
200.1 ms199.3 ms
benchmark_conversion[get_all_bonds]
benchmarks/structure/benchmark_bonds.py0%
180.6 µs179.9 µs
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
30.4 ms30.3 ms
benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
12.9 ms12.9 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py0%
701.4 ms699.3 ms
benchmark_get_structure_with_bonds
benchmarks/structure/benchmark_pdb.py0%
77.7 ms77.4 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
105.6 ms105.3 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
540 µs539 µs
benchmark_similar_kmers
benchmarks/sequence/align/benchmark_kmer.py0%
318.9 µs318.3 µs
benchmark_get_sequences[fasta_path1-ProteinSequence]
benchmarks/sequence/benchmark_fasta.py0%
8.8 ms8.8 ms
benchmark_conversion[as_set]
benchmarks/structure/benchmark_bonds.py0%
859.4 µs858.3 µs
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
103.9 ms103.8 ms
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py0%
135.4 µs135.3 µs
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py0%
9.9 ms9.9 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
124.6 ms124.5 ms
benchmark_create_kmers
benchmarks/sequence/align/benchmark_kmer.py0%
232.6 µs232.4 µs
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
18.4 ms18.4 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.2 ms9.1 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
10.1 ms10.1 ms
Commits
Click on a commit to change the comparison rangeBase
main
c236d1a
+0.04%
Note limited meaning of box in assembly
c5c57af
6 days ago
by padix-key