Always use continuous atom IDs
#861Comparing
padix-key:issue-860
(42204ba
) withmain
(5fde24b
)0%
- Untouched
- 63
Benchmarks
63 total
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
492.7 µs490.8 µs
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
124.5 ms124.2 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
81.5 ms81.3 ms
benchmark_superimpose[superimpose]
benchmarks/structure/benchmark_superimpose.py0%
2.5 ms2.5 ms
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
30 ms29.9 ms
benchmark_get_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
58.7 ms58.6 ms
benchmark_set_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
8.1 ms8 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py0%
184.9 ms184.6 ms
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py0%
32.3 ms32.2 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
201.4 ms201.2 ms
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
574 µs573.3 µs
benchmark_match_kmer_selection[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
459.5 µs459.1 µs
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py0%
10 ms9.9 ms
benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
458 µs457.6 µs
benchmark_compress
benchmarks/structure/benchmark_pdbx.py0%
698.9 ms698.4 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
541.3 µs540.9 µs
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.2 ms9.1 ms
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
624.7 µs624.3 µs
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
17.6 ms17.6 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
110.6 ms110.5 ms
benchmark_indexing_from_sequences[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.6 ms12.6 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.3 ms12.3 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
539.7 µs539.5 µs
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
10.1 ms10.1 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
105.6 ms105.6 ms
Commits
Click on a commit to change the comparison rangeBase
main
5fde24b
+0.01%
Always use continuous atom IDs
42204ba
9 days ago
by padix-key