Comparing
padix-key:issue-824
(603cc13
) withmain
(0826672
)0%
- Untouched
- 59
Benchmarks
59 total
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py+2%
153.3 µs150.8 µs
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py+1%
39.8 ms39.4 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+1%
188.8 µs187.1 µs
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py+1%
8.9 ms8.9 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py+1%
13.2 ms13.1 ms
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py+1%
496.1 µs492.7 µs
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
118.8 ms119.3 ms
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
625.3 µs622.8 µs
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py0%
312.7 ms313.9 ms
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
541.2 µs539.3 µs
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
84 ms83.7 ms
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
14.2 ms14.2 ms
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
577.4 µs575.8 µs
benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
462.2 µs461 µs
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
29.7 ms29.6 ms
benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
17.3 ms17.3 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
544.3 µs543.1 µs
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
201.4 ms201.8 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py0%
319.4 ms319.9 ms
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py0%
324.8 ms325.3 ms
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
38.8 ms38.8 ms
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
106.8 ms107 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
125.9 ms125.7 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
13 ms13 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py0%
675.2 ms675.9 ms
Commits
Click on a commit to change the comparison rangeBase
main
0826672
+0.1%
Do not use `res_name` do distinguish subsequent residues
603cc13
11 months ago
by padix-key