Comparing
padix-key:fix-test_one_letter_code
(8aad23a
) withmain
(9c2c6b2
)0%
- Untouched
- 98
Benchmarks
98 total
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
110.6 ms110.2 ms
benchmark_conversion[get_all_bonds]
benchmarks/structure/benchmark_bonds.py0%
180.2 µs179.5 µs
benchmark_concatenate
benchmarks/structure/benchmark_bonds.py0%
317.5 µs316.4 µs
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py0%
135.6 µs135.1 µs
benchmark_get_coord
benchmarks/structure/benchmark_pdb.py0%
4.2 ms4.2 ms
benchmark_conversion[as_array]
benchmarks/structure/benchmark_bonds.py0%
116.1 µs115.9 µs
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py0%
10 ms10 ms
benchmark_encode
benchmarks/sequence/benchmark_alphabet.py0%
183.1 µs182.8 µs
benchmark_get_all_bonds
benchmarks/structure/benchmark_bonds.py0%
181.7 µs181.3 µs
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
18.4 ms18.4 ms
benchmark_read
benchmarks/structure/benchmark_pdb.py0%
3.5 ms3.5 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
128.1 ms128 ms
benchmark_get_a3m_alignments
benchmarks/sequence/benchmark_fasta.py0%
576.8 ms576.2 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py0%
317.9 ms317.5 ms
benchmark_conversion[adjacency_matrix]
benchmarks/structure/benchmark_bonds.py0%
1.4 ms1.4 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py0%
311.7 ms311.4 ms
benchmark_conversion[bond_type_matrix]
benchmarks/structure/benchmark_bonds.py0%
1.4 ms1.4 ms
benchmark_set_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
8.1 ms8.1 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py0%
698.9 ms698.3 ms
benchmark_match_table[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
15.2 ms15.2 ms
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.5 ms9.5 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
199.4 ms199.3 ms
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py0%
2 s2 s
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
103.8 ms103.7 ms
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
14.5 ms14.5 ms
Commits
Click on a commit to change the comparison rangeBase
main
9c2c6b2
-0.07%
Adapt test to reflect new CCD version
8aad23a
20 days ago
by padix-key